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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaatcaacactctaaagtagtacatttggatcattttcttgctgaaacttttatctgtttttataatgaatttagggcactagtttatgttccgtgcagctattgatccagtgttaacgtcgagcttgttgtatagATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCATACATTGTTAATAACAGAACTATTTCAGCAG

Basic information

species Physcomitrella patens
transcript PP1S204_102V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162226796|gb|FC403829.1|FC403829
EST:     AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAG                         ATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
genomic: AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAGgtaaggaatc ... tgttgtatagATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
EST: gi|162152351|gb|FC328538.1|FC328538
EST:     AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAG                         ATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
genomic: AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAGgtaaggaatc ... tgttgtatagATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
EST: gi|162263592|gb|FC440102.1|FC440102
EST:     AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAG                         ATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
genomic: AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAGgtaaggaatc ... tgttgtatagATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
EST: gi|162168792|gb|FC344782.1|FC344782
EST:     AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAG                         ATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
genomic: AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAGgtaaggaatc ... tgttgtatagATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
EST: gi|162226810|gb|FC403830.1|FC403830
EST:     AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAG                         ATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
genomic: AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAGgtaaggaatc ... tgttgtatagATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
EST: gi|18333234|gb|BJ165248.1|BJ165248
EST:     AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAG                         ATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT
genomic: AGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAGgtaaggaatc ... tgttgtatagATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttatgttccgtgcagctattgatccagtgttaacgtcgagcttgttgtatagATTGACGCTGCCATTGTCCGGATCATGAAAACACGAAAAGTGTTAAGTCATACATTGTTAATAACAGAACTATTTCAGCAG
                              tgttaac  putative branch site (score: 2)
                   tattgat  TA-rich tract