1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtctaagctcttaaaaacaattactttaatcacttttagtcaaccaaagttgtcttatatttgtcgtaacctggtgtgcaccttttacgtagtatgcttggatggatgatatttgtgatcttcagaattgtttaccagaaatgttaggttcttaaaaactacccctcggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCTCTCCATTCTGGCTCACAGGAACAAGCAAGCTGGTGGTGATAAGCTTGT
species | Physcomitrella patens |
transcript | PP1S168_70V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGAGTTTTGGAACAG GTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCEST: gi|162259444|gb|FC434955.1|FC434955
genomic: AGAGTTTTGGAACAGgtctaagctc ... ggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
EST: CATGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAG GTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCEST: gi|162150598|gb|FC326454.1|FC326454
genomic: CATGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAGgtctaagctc ... ggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
EST: CATGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAG GTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCEST: gi|162189353|gb|FC366511.1|FC366511
genomic: CATGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAGgtctaagctc ... ggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
EST: CATGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAG GTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCEST: gi|162192557|gb|FC370604.1|FC370604
genomic: CATGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAGgtctaagctc ... ggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
EST: GTGCGGTGAAGAGAGTTTTGGAACAG GTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCEST: gi|162169785|gb|FC345322.1|FC345322
genomic: GTGCGGTGAAGAGAGTTTTGGAACAGgtctaagctc ... ggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
EST: CATGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAG GTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCEST: gi|162236018|gb|FC412177.1|FC412177
genomic: CATGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAGgtctaagctc ... ggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
EST: GGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAG GTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCEST: gi|208368987|gb|DC955072.1|DC955072
genomic: GGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAGgtctaagctc ... ggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
EST: CGGCATGTGCTCTGTGTGCGGTGAAGAGAG-TTTGGAACAG GTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCEST: gi|162200466|gb|FC376127.1|FC376127
genomic: CGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAGgtctaagctc ... ggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
EST: TGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAG GTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
genomic: TGGATGCCGGCATGTGCTCTGTGTGCGGTGAAGAGAGTTTTGGAACAGgtctaagctc ... ggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGC
cagaattgtttaccagaaatgttaggttcttaaaaactacccctcggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCTCTCCATTCTGGCTCACAGGAACAAGCAAGCTGGTGGTGATAAGCTTGT
cccctcg CT-rich tract
ttcttaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctaagctcttaaaaacaattactttaatcacttttagtcaaccaaagttgtcttatatttgtcgtaacctggtgtgcaccttttacgtagtatgcttggatggatgatatttgtgatcttcagaattgtttaccagaaatgttaggttcttaaaaactacccctcggacgtgcagGTTCTGATCACATAAGAGAGAAGGATGGAATCTGGGCTGTTTTGGCATGGCTCTCCATTCTGGCTCACAGGAACAAGCAAGCTGGTGGTGATAAGCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG