1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatgttgaggacttcacttacttgcagtgcaagtgtactgtggaaggatttcaggaactccaattgtatacatagccaatcaggtttcctattataatatgtctattttttagcattgtgttatgtgcttgatgttttgctatgaaatacattttaccttacattagttgcacgcgtgcagAGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGCCCTCCACGCAAGGGAGGCGGTAGCTGCAGGTCGTTTTGGAAATCAGAGAAAACGA
species | Physcomitrella patens |
transcript | PP1S15_331V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GATGGAAGACTACTTGCAGCTGTTATCGTGGG AGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGCCCTCCAEST: gi|162197774|gb|FC375024.1|FC375024
genomic: GATGGAAGACTACTTGCAGCTGTTATCGTGGGgtatgttgag ... acgcgtgcagAGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGCCCTCCA
EST: CTGTTATCGTGGG AGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGCCCTCCAEST: gi|162240319|gb|FC419291.1|FC419291
genomic: CTGTTATCGTGGGgtatgttgag ... acgcgtgcagAGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGCCCTCCA
EST: CCTGCTTTACGAGTTGAAGATGGAAGACTACTTGCAGCTGTTATCGTGNG AGTGATGGATGAAAGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGEST: gi|162196356|gb|FC373541.1|FC373541
genomic: CCTGCTTTACGAGTTGAAGATGGAAGACTACTTGCAGCTGTTATCGTGGGgtatgttgag ... acgcgtgcagAGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTG
EST: CCTGCTTTACGAGTTGAAGATGGAAGACTACTTGCAGCTGTTATCGTGGG AGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGCCC
genomic: CCTGCTTTACGAGTTGAAGATGGAAGACTACTTGCAGCTGTTATCGTGGGgtatgttgag ... acgcgtgcagAGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGCCC
gcttgatgttttgctatgaaatacattttaccttacattagttgcacgcgtgcagAGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGCCCTCCACGCAAGGGAGGCGGTAGCTGCAGGTCGTTTTGGAAATCAGAGAAAACGA
accttac putative branch site (score: 7)
tatgaaatacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgaggacttcacttacttgcagtgcaagtgtactgtggaaggatttcaggaactccaattgtatacatagccaatcaggtttcctattataatatgtctattttttagcattgtgttatgtgcttgatgttttgctatgaaatacattttaccttacattagttgcacgcgtgcagAGTGATGGATGAAGGCAGGGAGCTTTTGGTGGCTGCTAGCTTTGCCCTCCACGCAAGGGAGGCGGTAGCTGCAGGTCGTTTTGGAAATCAGAGAAAACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG