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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctttgttcaacttttgagaaatgactttgtacttataatagtttgtatgcagctatctgctaggtcattccctcgtaccagattctcctagttaaccatgttttgttttgacagGTGTTGGATGCCAAAGCTGGGTATTATGACAAGCCAATTGCTACGCTGGATTTCGCATCGCTGTATCCCTCCATTATGATGGCCTACAACCTTTGTTACT

Basic information

species Physcomitrella patens
transcript PP1S14_182V6.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S14_182V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: EDP09647 (Chlamydomonas reinhardtii), 3'ss of exon 14
---------------------gtaagtctttgttcaactt---ttgagaaatgactttgtactta----taatagtttgtatgcag--ctatctgctaggtcattccctcgt---accagattctcctagttaaccatgttt----tgttttgacagGTGTTG--GATGCCAAAGCTGG----GTATTATGACAAGCCAATTGCTACGCTGGATTTCGCATCGCTGTATCCCTCCATTATGATGGCCTACAACCTTTGTTACT----------------------
                     |  || ||| | ||||      | |||    |||   |   ||              |   ||||     |  |  |  |||  |    ||     ||||      ||    ||||  |      ||  ||  |   ||     | |||    |||      |   | ||     ||  | || |||||||||||||| |||||||| || ||||| ||||||||  ||||||| || |||                       
gtgagtgctgctgctgcctggggcagccttgggtcaatcccgatagaggcgggaccccgagattgggggcggggacagggtggcaggctcgttcgggacatcaggcgggggtgagggcagacctcaatacggtaccacatgcccagtgcctttgcccatggcaccgctgctgccgctaatgtcgctgtctgcagGCCCGGTGGCGACGCTGGATTTCGCCTCGCTGTACCCGTCCATCATGATGGCGCACAACCTCTGCTACACCACCCTGCTCACGAAGGACCA

upper sequence: PP1S14_182V6.1 (Physcomitrella patens), 3'ss of exon 14
lower sequence: EFJ15982 (Selaginella moellendorffii), 3'ss of exon 13
gtaagtctttgttcaacttttgagaaatgactttgtacttataatagtttgtatgcagctatctgctaggtcattccctcgtaccagattctcctagttaaccatgttttgttttgacagGTGTTGGATGCCAAAGCTGGGTATTATGACAAGCCAATTGCTACGCTGGATTTCGCATCGCTGTATCCCTCCATTATGATGGCCTACAACCTTTGTTACT
                                                                  || ||  |||   | |   |     |  |  | |||  || |  |||   ||||||  | || || |  ||||| | ||| || ||||||||||| ||||| ||||| ||||| ||||| || || ||||||||||| ||||| ||||| || |
-----------------------------------------------------------------gtaagtagttcgggcttttgaatcgatttttataaacgctgctgcgtt---acagGTTCTAGAAGCAAGGGCTGGATTTTACGAAAAGCCAATTGCCACGCTTGATTTTGCATCACTGTACCCATCAATTATGATGGCTTACAATCTTTGCTATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162216016|gb|FC393473.1|FC393473
EST:     ATGTCAAATCACAAGGAGTAGTATCAGGAGAAAGTTTTGAAGGAGCCACT                         GTGTTGGATGCCAAAGCTGGGTATTATGACAAGCCAATTGCTACGCTGGAT
genomic: ATGTCAAATCACAAGGAGTAGTATCAGGAGAAAGTTTTGAAGGAGCCACTgtaagtcttt ... gttttgacagGTGTTGGATGCCAAAGCTGGGTATTATGACAAGCCAATTGCTACGCTGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaggtcattccctcgtaccagattctcctagttaaccatgttttgttttgacagGTGTTGGATGCCAAAGCTGGGTATTATGACAAGCCAATTGCTACGCTGGATTTCGCATCGCTGTATCCCTCCATTATGATGGCCTACAACCTTTGTTACT
                              agttaac  putative branch site (score: 3)
                                         ttttgtttt  putative PPT
                                         ttttgtttt  TA-rich tract