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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaaccatatttcgtgttttctatcttcgctcttactttcgatgttttattacttgctcactaatatttctagggaatgtcagctgcggtatggtattattttaactgggtatctcacagGATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCCTACAATTTTTGCAAGTGTTCCACGCCTTTACAATCGTATTTATGATAA

Basic information

species Physcomitrella patens
transcript PP1S12_178V6.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162192791|gb|FC369629.1|FC369629
EST:     ACGTACTTGTCATGCTCCATCACGGTGTGGCGGTTGGCTTCTATCAAGGA                         GATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCCTACAATTTTT
genomic: ACGTACTTGTCATGCTCCATCACGGTGTGGCGGTTGGCTTCTATCAAGGAgtaaggaacc ... tatctcacagGATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCCTACAATTTTT
EST: gi|162234488|gb|FC409519.1|FC409519
EST:     ACGTACTTGTCATGCTCCATCACGGTGTGGCGGTTGGCTTCTATCAAGGA                         GATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCCTACAATTTTT
genomic: ACGTACTTGTCATGCTCCATCACGGTGTGGCGGTTGGCTTCTATCAAGGAgtaaggaacc ... tatctcacagGATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCCTACAATTTTT
EST: gi|162244441|gb|FC422614.1|FC422614
EST:     ACGTACTTGTCATGCTCCATCACGGTGTGGCGGTTGGCTTCTATCAAGGA                         GATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCCCTACA-TTTT
genomic: ACGTACTTGTCATGCTCCATCACGGTGTGGCGGTTGGCTTCTATCAAGGAgtaaggaacc ... tatctcacagGATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCC-TACAATTTT
EST: gi|162231382|gb|FC406805.1|FC406805
EST:     ACGTACTTGTCATGCTCCATCACGGTGTGGCGGTTGGCTTCTATCAAGGA                         GATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCCTACAATTTTT
genomic: ACGTACTTGTCATGCTCCATCACGGTGTGGCGGTTGGCTTCTATCAAGGAgtaaggaacc ... tatctcacagGATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCCTACAATTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctagggaatgtcagctgcggtatggtattattttaactgggtatctcacagGATATATTGAAGCTGATGGATGATATAGAGACTCTGAAGCCTACAATTTTTGCAAGTGTTCCACGCCTTTACAATCGTATTTATGATAA
                                  ttttaac  putative branch site (score: 2)
                        tatggtattattttaa  TA-rich tract