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...aattttggagtctacaaatgtttgatgaattgtgtcgtttatgaggatgccacagaaggacctgtttactaagtatcgttgcgttggttgcattcaacagAAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCAACTGACTTGGAAATCGATGGTGAACATGACGAAGAGGAGTTCGAATTTG
species | Physcomitrella patens |
transcript | PP1S107_75V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAG AAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCAEST: gi|162262917|gb|FC438777.1|FC438777
genomic: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAGgtgcaagtca ... cattcaacagAAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCA
EST: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAG AAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCAEST: gi|162262918|gb|FC438778.1|FC438778
genomic: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAGgtgcaagtca ... cattcaacagAAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCA
EST: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAG AAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCAEST: gi|162254694|gb|FC430983.1|FC430983
genomic: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAGgtgcaagtca ... cattcaacagAAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCA
EST: ATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAG AAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCAEST: gi|37847993|gb|BJ606001.1|BJ606001
genomic: ATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAGgtgcaagtca ... cattcaacagAAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCA
EST: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAG AAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCAEST: gi|162161441|gb|FC336815.1|FC336815
genomic: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAGgtgcaagtca ... cattcaacagAAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCA
EST: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAG AAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCA
genomic: CTTGGATGCTATTTCCAAAGCCTCTTATTTTGCGAAAGCGACATGTTCAGgtgcaagtca ... cattcaacagAAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCA
gatgccacagaaggacctgtttactaagtatcgttgcgttggttgcattcaacagAAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCAACTGACTTGGAAATCGATGGTGAACATGACGAAGAGGAGTTCGAATTTG
tttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttggagtctacaaatgtttgatgaattgtgtcgtttatgaggatgccacagaaggacctgtttactaagtatcgttgcgttggttgcattcaacagAAAATGCAGGGAAGAGCTTACGGAATGTTGAGAGAGTCTGATACTGAATCAACTGACTTGGAAATCGATGGTGAACATGACGAAGAGGAGTTCGAATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG