1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttcgaccttaatcttctgaccctctagaccagacccgtccattccaggcttttgtggtttactggactggtttctgaatcaaacctcaatatgtcttatcccttgtgttgaaatattgttgtcattctaatgctccaattacatgctaagaatccacggatgtattccttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGAGTCTCATATAATATTTTTGAACCTTATATCG
species | Physcomitrella patens |
transcript | PP1S83_234V6.4 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGEST: gi|162250016|gb|FC427117.1|FC427117
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGEST: gi|18338563|gb|BJ170587.1|BJ170587
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGEST: gi|37826149|gb|BJ584161.1|BJ584161
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGEST: gi|162154986|gb|FC331404.1|FC331404
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCGTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGEST: gi|162159567|gb|FC335745.1|FC335745
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGEST: gi|162250017|gb|FC427118.1|FC427118
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGEST: gi|162247262|gb|FC423060.1|FC423060
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGEST: gi|162159566|gb|FC335744.1|FC335744
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGEST: gi|37837126|gb|BJ595134.1|BJ595134
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
EST: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG GAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
genomic: TGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAGgttcgacctt ... cttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTG
cattctaatgctccaattacatgctaagaatccacggatgtattccttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGAGTCTCATATAATATTTTTGAACCTTATATCG
ttctaat putative branch site (score: 2)
ttccttatt putative PPT
aattacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgaccttaatcttctgaccctctagaccagacccgtccattccaggcttttgtggtttactggactggtttctgaatcaaacctcaatatgtcttatcccttgtgttgaaatattgttgtcattctaatgctccaattacatgctaagaatccacggatgtattccttattgtagGAAATTCGGCTATTCAAGCTATATTGTTGCTACTTCAGAAAGGAGTACCTGAGTCTCATATAATATTTTTGAACCTTATATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG