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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggcacaacgatttgggtttcagaacatgtctcgctttgtgtttttcacactttctcaacactcgtattttgtttttagttcatagaacaatgagatacaacgaagaacaaactggcttgatgaagtgtactcctcgtccgcgtgaaccaatatttttcttgtcgtcttgacctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGACTACATCAGCATCGCCGCATAGACAAAAATGTAGGGGTCTTCAATTGCCA

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 3'ss of exon 12
lower sequence: LOC_Os12g37870.1 (Oryza sativa), 3'ss of exon 10
gttaggcacaacgatttgggtttcagaacatgtctcgctttgtgtttttcacactttctcaacactcgtattttgtttttagttcatagaacaatgagatacaacgaagaacaaactggcttgatgaagtgtactcct----cgtccgcgtgaaccaatatttttcttgtcgtcttgacctgga-gcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGACTACATCAGCATCGCCGCATAGACAAAAATGTAGGGGTCTTCAATTGCCA-
              | |||   |     |    ||  || |||  ||    ||    || | | |    ||||  |      || ||   |       || |  |  |||  ||  |   | ||   ||   ||   |    | ||| | ||| |  |||     |  |  |  || ||      |||||||||||||||||| ||||  ||||||||||| ||||||||||| || || | |||||     |  ||||| |   | |        |   |  || ||| 
-------------gtatggacctactggcta--cttactatgttcttccagcaaac-cttagctcagccatttcctacactatttatcaga-------attcgtcagagattaactttattagacataggacaccattggaccatccccatgatc--ataacggacgagctgaattcactgaattgcagGTATATGGACCAGAGGCAACAATGACTGGAATCTGCAAGCAAGCCATTGATTGCATCATGGCTGAAGCATA-ATTCAGACAACTATTTGCGCTGTTCCCAG

upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 3'ss of exon 12
lower sequence: LOC_Os11g47120.1 (Oryza sativa), 3'ss of exon 10
gttaggcacaacgatttgg-gtttcagaacatgtctcgctttgtgtttttcacactttctcaacactcgtatt--ttgtttttagttcatagaacaatgagatacaacgaagaacaaactggcttgatgaagtg--tactcctcgt-ccgcgtgaaccaatatttttcttgtcgtcttgacc--tggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGACTACATCAGCATCGCCGCATAGACAAAAATGTAGGGGTCTTCAATTGCCA-
         |  ||| | | || ||  |      ||| || | || | | ||     | | |   ||    ||  |   |   | |    | | | || || |     |  |      |||  |   |    ||   |  ||||   |  |  | |  |     |||||  | |      ||      |||||| ||||| |||||||| |  ||||||||||| |||||||||||||| || | | | |    ||| ||||| |  || ||| | |  |||   ||   || 
-------gtacggatctagtgtctcctactgcacctctctctttgctatgcaagacctgttatgtctgaagttcataaatgcaaatgggcaaacctatcagtt-tgttgttggtggttctgaatcactatcctgaccatccctcacacaacacggatgagctgatttctgtttgaacaacccatcactgcagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAATGCGTTATGGCCGCAGCATAAATGAAGATGCAAGT-TCTGGGATCTGCAG

upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 3'ss of exon 12
lower sequence: LOC_Os11g47330.1 (Oryza sativa), 3'ss of exon 10
gttaggcacaacgatttgg-gtttcagaacatgtctcgctttgtgtttttcacactttctcaacactcgtattttgt---ttttagttcatagaacaatgagat--acaacgaaga-----acaaactggcttgatgaagtgtactcctcgtccgcgtgaaccaatatttttcttgtcgtcttgacctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGACTACATCAGCATCGCCGCATAGACAAAAATGTAGGGGTCTTCAATTGCCA-
         |  ||| |   || ||  |      ||| || | || | | ||     | | |  |   | | ||  |   |   | |    | | | || || |       |  |      |   |||  | |||  |      | |      ||  ||| |  || | | | |   |  |    |   |  ||||| ||||| |||||||| |  ||||||||||| |||||||||||||| || | | | |    ||| ||||| |  || ||| | |  |||   ||   || 
-------gtacggatctactgtctcctactgcacctctctctttgctatgcaagacctgtta-tatctgaagttcataaatgcaaatgggcaaacctatcagtttgttgttggtggttctgaatcactatcctgaccatcccctcacacaacacggatgagctgatttctgtttgaacaacccatcactg--cagGTGTATGGGCCAGAAGCGACGATGACTGGAATCTGCAAGCAAGCAATTGAATGCGTTATGGCCGCAGCATAAATGAAGATGCAAGT-TCTGGGATCTGCAG

upper sequence: PP1S7_156V6.2 (Physcomitrella patens), 3'ss of exon 12
lower sequence: GRMZM2G107082_T01 (Zea mays), 3'ss of exon 10
gttaggcacaacgatttgggtttcagaacatgtctcgctttg-tgtttttcacacttt--ctcaacactcgtattttgtttttagttcatagaacaatgagatacaacgaagaacaaac--tggcttgatgaagtgtactcctcgtccgcgtgaaccaatatttttcttgtcgtcttgacctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGACTACATCAGCATCGCCGCATAGACAAAAATGTAGGGGTCTTCAATTGCCA-
         |  ||| | | |  | | |    | |   |  | || |    || ||||  ||||  |     || |      |||  ||| ||||  |  | |      |   |||||   |||   |  |      ||| | | |     ||| |  ||  | || |          | |    |||||| ||||| |||||||| | |||||||||||| ||||| |||||||| || | |||||     || || ||  || |   ||||   |    | ||     
-------gtactgatctagttgcctgtaagcatttttttggggtgatggaaaccctttagctcagaaaatagatgtgaaaaatag--cattgaaccgtctgttgttggcagtcacaaatcatggtcagcagttcacaacttcacatatagatgagctgattgtgttttgaaaaaa--aatccaccgcagGTGTATGGGCCAGAAGCGACTATGACTGGAATCTGCAAACAAGCAATTGAATGCATCATGGCTGCAGCGTAATCAGAG-CGTAGCTCTGGGTAGTTTGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208394814|gb|DC920157.1|DC920157
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67699027|gb|BJ959260.1|BJ959260
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162274022|gb|FC450369.1|FC450369
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208374183|gb|DC945229.1|DC945229
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208371001|gb|DC944376.1|DC944376
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208362836|gb|DC950636.1|DC950636
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAN
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162223607|gb|FC399419.1|FC399419
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208384409|gb|DC928160.1|DC928160
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162270681|gb|FC446294.1|FC446294
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208369217|gb|DC956050.1|DC956050
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208367644|gb|DC955003.1|DC955003
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|13315390|gb|BG409045.1|BG409045
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|37846179|gb|BJ604187.1|BJ604187
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162203672|gb|FC378547.1|FC378547
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67701044|gb|BJ961277.1|BJ961277
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208374459|gb|DC948435.1|DC948435
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208366133|gb|DC955234.1|DC955234
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67722000|gb|BJ972259.1|BJ972259
EST:     TGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: TGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162198094|gb|FC372121.1|FC372121
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67724921|gb|BJ975180.1|BJ975180
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208379626|gb|DC927123.1|DC927123
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208386150|gb|DC949061.1|DC949061
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208364385|gb|DC950686.1|DC950686
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208390780|gb|DC945853.1|DC945853
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|37851290|gb|BJ609298.1|BJ609298
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208386182|gb|DC949093.1|DC949093
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|37845304|gb|BJ603312.1|BJ603312
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208370928|gb|DC944303.1|DC944303
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162184487|gb|FC359961.1|FC359961
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|18341274|gb|BJ173308.1|BJ173308
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67725040|gb|BJ975299.1|BJ975299
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|13315646|gb|BG409301.1|BG409301
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208364465|gb|DC958034.1|DC958034
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162198093|gb|FC372120.1|FC372120
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67721605|gb|BJ971864.1|BJ971864
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67720385|gb|BJ970644.1|BJ970644
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208368243|gb|DC951509.1|DC951509
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208354287|gb|DC957465.1|DC957465
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208360305|gb|DC950250.1|DC950250
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162169806|gb|FC346162.1|FC346162
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67691916|gb|BJ952149.1|BJ952149
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|162177053|gb|FC353106.1|FC353106
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|208379943|gb|DC927669.1|DC927669
EST:     GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GGCTTGCCAAAATGAGGGAACTGGGAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
EST: gi|67722874|gb|BJ973133.1|BJ973133
EST:     GAGCTGAGATTGGAATTCCAATTGAG                         GTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC
genomic: GAGCTGAGATTGGAATTCCAATTGAGgttaggcaca ... cctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtactcctcgtccgcgtgaaccaatatttttcttgtcgtcttgacctggagcagGTATATGGACCAGAAGCAAGTATGACTGGAATTTGCAAGCAAGCAATCGACTACATCAGCATCGCCGCATAGACAAAAATGTAGGGGTCTTCAATTGCCA
                                       tcttgac  putative branch site (score: 3)
                       aatatttttcttgt  TA-rich tract