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...tgagcaggctttaactatgtgaagccctgattagtttatccctagtagtgaacgccacgaagtcgatttaaattgacgtttctgttggatatgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTCTGCAAGCACTCCGGCAAAGTTGTCCGGCTGTATATCAACTTTGCACAG
species | Physcomitrella patens |
transcript | PP1S570_1V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTEST: gi|37826251|gb|BJ584263.1|BJ584263
genomic: TGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
EST: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTEST: gi|37839397|gb|BJ597405.1|BJ597405
genomic: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
EST: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTEST: gi|162187047|gb|FC362829.1|FC362829
genomic: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
EST: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTEST: gi|37830212|gb|BJ588224.1|BJ588224
genomic: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
EST: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTEST: gi|37851486|gb|BJ609494.1|BJ609494
genomic: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
EST: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTEST: gi|162151695|gb|FC327824.1|FC327824
genomic: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
EST: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTEST: gi|37829499|gb|BJ587511.1|BJ587511
genomic: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
EST: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTEST: gi|162155670|gb|FC331283.1|FC331283
genomic: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
EST: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTEST: gi|37827853|gb|BJ585865.1|BJ585865
genomic: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
EST: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAG ATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
genomic: TGAAAGATCTGCTCGGACCTGAGGCTGCATATACTACTGATTCCACCAAGgttgttcctc ... atgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCT
tagtgaacgccacgaagtcgatttaaattgacgtttctgttggatatgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTCTGCAAGCACTCCGGCAAAGTTGTCCGGCTGTATATCAACTTTGCACAG
aattgac putative branch site (score: 5)
atttaaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagcaggctttaactatgtgaagccctgattagtttatccctagtagtgaacgccacgaagtcgatttaaattgacgtttctgttggatatgcacacagATTGCACTAGTCGAACAGGAGAGTGTAATCTCGAAACGGTTGATGTCCTCTCTGCAAGCACTCCGGCAAAGTTGTCCGGCTGTATATCAACTTTGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG