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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtgtgtttacgtagaccttgctttttgaataagcgccactgtccttcagagtcgagtatttgcctcgttcatttctgatccaaggcatgtgattgcagCAAGGTAGTGAGGGTGTTCTGAGTATTGCCTTTGGGGAAAGCATGCTCAAAATCTCAAATAATCACATCCG

Basic information

species Physcomitrella patens
transcript PP1S55_207V6.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194974|gb|FC370586.1|FC370586
EST:     ATTTACACAAGCGCTATGGTGATGTTGTGGCCATTGATTTGATAAACCAG                         CAAGGTAGTGAGGGTGTTCTGAGTATTGCCTTTGGGGAAAGCATGCTCAAA
genomic: ATTTACACAAGCGCTATGGTGATGTTGTGGCCATTGATTTGATAAACCAGgtacgctttc ... gtgattgcagCAAGGTAGTGAGGGTGTTCTGAGTATTGCCTTTGGGGAAAGCATGCTCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcagagtcgagtatttgcctcgttcatttctgatccaaggcatgtgattgcagCAAGGTAGTGAGGGTGTTCTGAGTATTGCCTTTGGGGAAAGCATGCTCAAAATCTCAAATAATCACATCCG
                             ttctgat  putative branch site (score: 3)
           agtattt  TA-rich tract