1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagaactcatttcttgtgtttgagtatcgaaccttgtgcgtagcttgtcgaacttaaaagtgagtcgcacatagatgtagtgtgtgatcttggaaagctgctttttgcagTCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGCTTAAAGCAGTCGCCTCCAAAGCAGCGAAACTTCCCTGGAGATGCATATT
species | Physcomitrella patens |
transcript | PP1S488_10V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCGTAGGCAATGATCCTCGAGAAGATCGCTACTTCAGCATTCCAAAGCAG TCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGCEST: gi|208349448|gb|DC921936.1|DC921936
genomic: GCGTAGGCAATGATCCTCGAGAAGATCGCTACTTCAGCATTCCAAAGCAGgtaagaactc ... ctttttgcagTCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGC
EST: GCGTAGGCAATGATCCTCGAGAAGATCGCTACTTCAGCATTCCAAAGCAG TCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGCEST: gi|37823251|gb|BJ581317.1|BJ581317
genomic: GCGTAGGCAATGATCCTCGAGAAGATCGCTACTTCAGCATTCCAAAGCAGgtaagaactc ... ctttttgcagTCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGC
EST: GCGTAGGCAATGATCCTCGAGAAGATCGCTACTTCAGCATTCCAAAGCAG TCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGCEST: gi|162236499|gb|FC413074.1|FC413074
genomic: GCGTAGGCAATGATCCTCGAGAAGATCGCTACTTCAGCATTCCAAAGCAGgtaagaactc ... ctttttgcagTCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGC
EST: GCGTAGGCAATGATCCTCGAGAAGATCGCTACTTCAGCATTCCAAAGCAG TCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGC
genomic: GCGTAGGCAATGATCCTCGAGAAGATCGCTACTTCAGCATTCCAAAGCAGgtaagaactc ... ctttttgcagTCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGC
aaaagtgagtcgcacatagatgtagtgtgtgatcttggaaagctgctttttgcagTCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGCTTAAAGCAGTCGCCTCCAAAGCAGCGAAACTTCCCTGGAGATGCATATT
ctgcttttt CT-rich tract
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaactcatttcttgtgtttgagtatcgaaccttgtgcgtagcttgtcgaacttaaaagtgagtcgcacatagatgtagtgtgtgatcttggaaagctgctttttgcagTCAGCAACTTATGACCCTGAAGGAGAGTACGTAGCGCATTGGCTTCCAAGCTTAAAGCAGTCGCCTCCAAAGCAGCGAAACTTCCCTGGAGATGCATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG