1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ggtattgagttgagttctgagcttagagatgatatttgagctgatctgatggctgtttttttgtttcctcatcttttgcaactgaaccatacctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA
species | Physcomitrella patens |
transcript | PP1S47_196V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTG AAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTEST: gi|162202250|gb|FC377586.1|FC377586
genomic: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTGgtaatggacc ... acctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATT
EST: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTG AAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTEST: gi|162202249|gb|FC377585.1|FC377585
genomic: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTGgtaatggacc ... acctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATT
EST: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTG AAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTEST: gi|208347797|gb|DC921124.1|DC921124
genomic: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTGgtaatggacc ... acctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATT
EST: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTG AAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTEST: gi|37833862|gb|BJ591874.1|BJ591874
genomic: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTGgtaatggacc ... acctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATT
EST: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTG AAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTEST: gi|162177458|gb|FC353719.1|FC353719
genomic: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTGgtaatggacc ... acctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATT
EST: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTG AAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTEST: gi|18333973|gb|BJ165989.1|BJ165989
genomic: TTAACAAGGCATTGTCGGCAGCAAAAACTGACACCGAAAAAGAAGAAGTGgtaatggacc ... acctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATT
EST: GGCAGCAAAANCTGACACCGAAAAAGAAGAAGTG AAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATT
genomic: GGCAGCAAAAACTGACACCGAAAAAGAAGAAGTGgtaatggacc ... acctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATT
ctgatggctgtttttttgtttcctcatcttttgcaactgaaccatacctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA
tttttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtattgagttgagttctgagcttagagatgatatttgagctgatctgatggctgtttttttgtttcctcatcttttgcaactgaaccatacctgcacagAAAGCAAAGAAGCTCAGTTCAAGCACGAAGCTGCGCTCAAACAATAATATTGTAACTCTAGCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA