1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtacggctttgaataaacctttgcaatcttccctcctttctgatcctggcttggtagatgcatagctgtctgcacctctttttcagggtaatgcttgtcgtgtatcaaaactcttatcttgttctaaatagttttcttcgactttttaaaattcattcttactctattgcagGACAAGTTAATGACTGCTCCAGTTACTGAAAGCAGTTCTGGCGGCTGGCTTTTCAAGAACAAGGAGCACGGAAAGGCTACTGCAGCAGCGAGCTTG
species | Physcomitrella patens |
transcript | PP1S3_553V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATCTGGCTGCCACTTTTGTTAATGGATTCGTGAATGCTGGGTTCGGCGTG GACAAGTTAATGACTGCTCCAGTTACTGAAAGCAGTTCTGGCGGCTGGCTTEST: gi|162163327|gb|FC339653.1|FC339653
genomic: ATCTGGCTGCCACTTTTGTTAATGGATTCGTGAATGCTGGGTTCGGCGTGgtacggcttt ... tctattgcagGACAAGTTAATGACTGCTCCAGTTACTGAAAGCAGTTCTGGCGGCTGGCTT
EST: ATCTGGCTGCCACTTTTGTTAATGGATTCGTGAATGCTGGGTTCGGCGTG GACAAGTTAATGACTGCTCCAGTTACTGAAAGCAGTTCTGGCGGCTGGCTT
genomic: ATCTGGCTGCCACTTTTGTTAATGGATTCGTGAATGCTGGGTTCGGCGTGgtacggcttt ... tctattgcagGACAAGTTAATGACTGCTCCAGTTACTGAAAGCAGTTCTGGCGGCTGGCTT
cttgttctaaatagttttcttcgactttttaaaattcattcttactctattgcagGACAAGTTAATGACTGCTCCAGTTACTGAAAGCAGTTCTGGCGGCTGGCTTTTCAAGAACAAGGAGCACGGAAAGGCTACTGCAGCAGCGAGCTTG
ttcttac putative branch site (score: 15)
ttcattcttactct CT-rich tract
actttttaaaattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggctttgaataaacctttgcaatcttccctcctttctgatcctggcttggtagatgcatagctgtctgcacctctttttcagggtaatgcttgtcgtgtatcaaaactcttatcttgttctaaatagttttcttcgactttttaaaattcattcttactctattgcagGACAAGTTAATGACTGCTCCAGTTACTGAAAGCAGTTCTGGCGGCTGGCTTTTCAAGAACAAGGAGCACGGAAAGGCTACTGCAGCAGCGAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT