1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttgacttgaagagaaccttggctgcttcatcagcttcattcaatagcttcagattcttcctcctaggttagattctgacctgggcaattactgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCTATGGTGGCAAGCCCATCGGCATATGAAGGAAAGAGCGTGAAAGGGGACA
species | Physcomitrella patens |
transcript | PP1S39_322V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAG CTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCTEST: gi|37820951|gb|BJ579017.1|BJ579017
genomic: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAGgtaatgagat ... actgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCT
EST: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAG CTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCTEST: gi|37832391|gb|BJ590403.1|BJ590403
genomic: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAGgtaatgagat ... actgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCT
EST: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAG CTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCTEST: gi|37852883|gb|BJ610891.1|BJ610891
genomic: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAGgtaatgagat ... actgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCT
EST: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAG CTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCTEST: gi|162232998|gb|FC407885.1|FC407885
genomic: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAGgtaatgagat ... actgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCT
EST: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAG CTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCTEST: gi|37836268|gb|BJ594276.1|BJ594276
genomic: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAGgtaatgagat ... actgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCT
EST: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAG CTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCTEST: gi|37833070|gb|BJ591082.1|BJ591082
genomic: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAGgtaatgagat ... actgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCT
EST: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAG CTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCT
genomic: TGGGGGAGCAAAAGAAGATCCTGAAGTATCGAGCGGAACAGTTTTGCAAGgtaatgagat ... actgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCT
agcttcagattcttcctcctaggttagattctgacctgggcaattactgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCTATGGTGGCAAGCCCATCGGCATATGAAGGAAAGAGCGTGAAAGGGGACA
ttctgac putative branch site (score: 2)
ttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgacttgaagagaaccttggctgcttcatcagcttcattcaatagcttcagattcttcctcctaggttagattctgacctgggcaattactgttgcagCTCCTGAAGGACTGCGGCTGGGACGTCGTGGAGCCTTTAGGAGGCATATCTATGGTGGCAAGCCCATCGGCATATGAAGGAAAGAGCGTGAAAGGGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - -tgcttca