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gtgagtgcttttcatcttctcaactcttttgtctttccttctataaccttaagttccagtggttagtcctacagcttgtgtatgaagcatcagttgtgtgacactgaatgaacatcgggatccgttgttctgtcacagGTGGTTGCAGGAGGAGGGGCAGTGGAGGCAGCCTTGTCAGTGTACTTGGAAAATCTAGCAACTACGTTAGGATCTCGAGAGCAACTTGCTATAGCTGAGT
species | Physcomitrella patens |
transcript | PP1S39_248V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTATTCATGATTCATTGAGTATTGTCAAGCGTACACTGGAATCTAATACT GTGGTTGCAGGAGGAGGGGCAGTGGAGGCAGCCTTGTCAGTGTACTTGGAAEST: gi|37843579|gb|BJ601587.1|BJ601587
genomic: CTATTCATGATTCATTGAGTATTGTCAAGCGTACACTGGAATCTAATACTgtgagtgctt ... tctgtcacagGTGGTTGCAGGAGGAGGGGCAGTGGAGGCAGCCTTGTCAGTGTACTTGGAA
EST: ATTGAGTATTGTCAAGCGTACACTGGAATCTAGTACT GTGGTTGCAGGAGGAGGGGCCAGTGGAGGCAGCCTTGTCAGTGTACTTGGA
genomic: ATTGAGTATTGTCAAGCGTACACTGGAATCTAATACTgtgagtgctt ... tctgtcacagGTGGTTGCAGGAGGAGGGG-CAGTGGAGGCAGCCTTGTCAGTGTACTTGGA
gaagcatcagttgtgtgacactgaatgaacatcgggatccgttgttctgtcacagGTGGTTGCAGGAGGAGGGGCAGTGGAGGCAGCCTTGTCAGTGTACTTGGAAAATCTAGCAACTACGTTAGGATCTCGAGAGCAACTTGCTATAGCTGAGT
ttgttct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgcttttcatcttctcaactcttttgtctttccttctataaccttaagttccagtggttagtcctacagcttgtgtatgaagcatcagttgtgtgacactgaatgaacatcgggatccgttgttctgtcacagGTGGTTGCAGGAGGAGGGGCAGTGGAGGCAGCCTTGTCAGTGTACTTGGAAAATCTAGCAACTACGTTAGGATCTCGAGAGCAACTTGCTATAGCTGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA