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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcaccctgcacgtgatgaatgtttcagacccgttttcttttcttttcttttccttcatacttttaatgtttaatatgttccccccacaaatttttcagcatcaaattttccaacccagcaattgtttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTGTTCATAATCATGTTAAGATACCTCAAGTCTCGAAGGATATTGTGACAAG

Basic information

species Physcomitrella patens
transcript PP1S395_48V6.3
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162266124|gb|FC441873.1|FC441873
EST:     GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTG                         AGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
genomic: GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTGgtaagttcac ... ttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
EST: gi|67695081|gb|BJ955314.1|BJ955314
EST:     GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTG                         AGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
genomic: GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTGgtaagttcac ... ttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
EST: gi|37844029|gb|BJ602037.1|BJ602037
EST:     GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTG                         AGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
genomic: GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTGgtaagttcac ... ttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
EST: gi|162260621|gb|FC436625.1|FC436625
EST:     GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTG                         AGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
genomic: GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTGgtaagttcac ... ttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
EST: gi|162280061|gb|FC456455.1|FC456455
EST:     GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTG                         AGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
genomic: GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTGgtaagttcac ... ttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
EST: gi|18336282|gb|BJ168304.1|BJ168304
EST:     GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTG                         AGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
genomic: GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTGgtaagttcac ... ttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
EST: gi|162266125|gb|FC441874.1|FC441874
EST:     GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTG                         AGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
genomic: GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTGgtaagttcac ... ttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
EST: gi|37840487|gb|BJ598495.1|BJ598495
EST:     GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTG                         AGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
genomic: GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTGgtaagttcac ... ttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
EST: gi|162280060|gb|FC456454.1|FC456454
EST:     GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTG                         AGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG
genomic: GAATCTTTGGTATGAATCTCAAGTCCTACTTGGAAGAGCATGTGgtaagttcac ... ttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccccacaaatttttcagcatcaaattttccaacccagcaattgtttattcgcagAGGGCATTCTACTACACAACAGCCGGCATTGTTTTCGGAGGCATTGTCTTGTTCATAATCATGTTAAGATACCTCAAGTCTCGAAGGATATTGTGACAAG
                                            tttattc  CT-rich tract
                                       aattgtttatt  TA-rich tract