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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattttcgtacctagatcttgctttgtacttgcaaatccctatattattttggagatttatttttggtttgtcttgtgagcagGGGGAAGACATTTGCGTAGCACTTCAGACACACATTAATGATGTTATGTTGCGGCGATACTCCAGAAACAAAAATATTCCTAATGGGCAGGTATCAAATG

Basic information

species Physcomitrella patens
transcript PP1S364_50V6.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 3'ss of exon 13
lower sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 12
-------------------------gttattttcgtacctagatcttg--ctttgtacttgcaaatccctatattattttggagat--------ttatttttggtttgtc-ttgtgagcagGGGGAAGACATTTGCGTAGCACTTCAGACACACATTAATGATGTTATGTTGCGGCGATACTCCAGAAACAAAAATATTCCTAATGGGCAGGTATCAAATG
                           | |     |  ||  || | |  ||||| ||||    ||  ||  |||| ||||||| |        |||||  |  ||| || || |  | |||| ||||| ||||| ||||| |||||||||||||| |||||||| ||| |||| || || |||| |     |  |  | |   ||| |   |     | |
gtattagcatgctcagggacattctactctaccaatttcttaatttcggcctttggacttattcatatcttcattactttggagttattttatattattagtattttatcattctttgaagGGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGATGTAATGCTGCGCCGCTATTCCAAAGCTCGATCTGCTGCGGGTGGTCCTTTGAATGAAG

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 3'ss of exon 13
lower sequence: GLYMA16G21340.1 (Glycine max), 3'ss of exon 15
gttattttcgtacctagatcttgctttgtacttgcaaatccctatattattttgg-agatttatttttggtttgtcttgtgagcagGGGGAAGACATTTGCGTAGCACTTCAGACACACATTAATGATGTTATGTTGCGGCGATACTCCAGAAACAAAAATATTCCTAATGGGCAGGTATCAAATG--
     | |  |||||   | |    ||| ||   |          |||||||||  | | |  | |||  | |  ||||   | |||| ||||| ||||| ||||| |||||||||||||| |||||||| ||| |||| || || || | |   | |     | ||  |||   ||||     |   
----gtataatacctttgt-tgatgttgcacaaactttctttggaattattttgtcacactggtattttatct--cttggttgtagGGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGATGTAATGCTGCGTCGCTATTCGAAAGCAAGATCAGCTGCTGGTGGT--GGTAGTGGTTCTC

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 3'ss of exon 13
lower sequence: GLYMA11G09480.1 (Glycine max), 3'ss of exon 12
-----------------------gttattttcgta--cctagatcttg--ctttgtacttg-caaatccctatattattttggagat---ttatttt-----tggtttgtc-ttgtgagcagGGGGAAGACATTTGCGTAGCACTTCAGACACACATTAATGATGTTATGTTGCGGCGATACTCCAGAAACAAAAATATTCCTAATGGGCAGGTATCAAATG
                       ||  | ||| ||   ||  || | |  ||||| ||||| |  ||  ||  |||| |||| || |   |||||||     |  ||| || || |  | |||| ||||| ||||| ||||| |||||||||||||| ||||| || |||||||| || || |||| |     |  |  |     ||      |     | |
gtattggcatgttcagggacactgtactcttcctagttcttaatttcgacctttggacttgactcatatcttcattactttgaagttattttattttattggtattttatcattctttgaagGGAGAAGAAATTTGTGTAGCTCTTCAGACACACATAAATGACGTAATGTTGCGACGCTATTCCAAAGCTCGATCTGCTGTGGGTGAATCTTTGAATGAAG

upper sequence: PP1S364_50V6.1 (Physcomitrella patens), 3'ss of exon 13
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 11
-------------------------------------gttattttcgtacctagatcttgctttgtacttgcaaatccctatattatt--ttggagatttatt-tttggt---------ttgtcttgtgagcagGGGGAAGACATTTGCGTAGCACTTCAGACACACATTAATGATGTTATGTTGCGGCGATACTCCAGAAACAAAAATATTCCTAATGGGCAGGTATCAAATG
                                         |||| |    |   |||   |||    ||    || |||   ||     |   | | ||||| |||| |         ||   || |  |||||| ||||| ||||| || || |||||||| || || ||||||||||||||||| || || || | |        |  | ||| |||     |       |
gttcttaatcttttgagtttctatatgtatatatataacatttttagagttttagtctcttttttcttttatgtattccttgtttgcctatcaaaaaattattatttgatagagttctattccattttatgcagGGAGAAGAAATTTGTGTTGCTCTTCAGACGCATATAAATGATGTTATGTTGCGTCGCTATTCTAAAGCACGGTCTGCTGCTAGTGGCTCTATGAATGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcaaatccctatattattttggagatttatttttggtttgtcttgtgagcagGGGGAAGACATTTGCGTAGCACTTCAGACACACATTAATGATGTTATGTTGCGGCGATACTCCAGAAACAAAAATATTCCTAATGGGCAGGTATCAAATG
                                       tttgtctt  CT-rich tract
            tatattattttggaga  TA-rich tract