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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttataatatagtatttttgtcgttcatgctctcaagaaatcgagcctcttggcttttaactcgtattttctgatgatagatttaatgttggtttgttcagAGGAGGTTTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTA

Basic information

species Physcomitrella patens
transcript PP1S34_101V6.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S34_101V6.1 (Physcomitrella patens), 3'ss of exon 13
lower sequence: GLYMA13G33390.1 (Glycine max), 3'ss of exon 9
------------------------------------------------------ttataatatagtatttttgtcgttcatgctctcaagaaatcgagcctcttggcttttaactcgt-att-ttctgatgatagatttaatgttggtttgttcagAGGAGGTTTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTA
                                                      ||  | |||| || |       |  ||   ||| |           | | |  |||| || | | ||| || || |||| | | | |   |   |  | |||  ||||| | |   |||| |||  | || ||||| || ||| | ||||| |||||||||||||| |||||||||||||| || || || || || || ||
gtttatttctatatactcaccatttgccattaggctttgaatggaaaaacattttttcattataatactacctatttatatagactccaatttcttgttatttggattttttacactttattgttgtgttgattgttattactctaaatgatgcagCTGAGGTGTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTA

upper sequence: PP1S34_101V6.1 (Physcomitrella patens), 3'ss of exon 13
lower sequence: GLYMA07G10190.1 (Glycine max), 3'ss of exon 12
ttataatatagtatttttgtcgttcatgctctcaagaaatcgagcctcttggct--tttaactcgtatt-ttctgatgatagatttaatgttggtttgttcagAGGAGGTTTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTA
                                           |    |||| |  ||||     |||| || |  |||| | | | |   |   |  |  |   ||||| | | | || | |||    || ||||| || ||  | ||||| |||||||||||||| |||||||||||||| || |                
-------------------------------------------gttatttggatattttacactttattgttgtattgattgttattactctaaatgatgtaactgagGTGTATGTTGAAATACAAGATTTTATACGATCAGTGCTTGATGGCTTTAATGTATGTATATTTGCTTATGGCCAGACTG----------------

upper sequence: PP1S34_101V6.1 (Physcomitrella patens), 3'ss of exon 13
lower sequence: GLYMA08G04580.1 (Glycine max), 3'ss of exon 5
-----ttataatatagtatttttgtcgttcatgctctcaagaaatcgagcctcttggcttttaactcgtattttctgatgatagatttaatgttggtttgttcagAGGAGGTTTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTA
     |||  ||  | | ||||| ||     | ||| |     ||  ||  | ||   ||   | ||  || || |  | ||    ||||  |||  |  | ||| |||||| |     ||||  ||  | || ||| | || ||  | ||||||| |||||| ||||| ||||||||||||||||| || || || || || ||
aggttttaggattaattttttttatcacagtttctccctg---attaagt-tgttatgttaacattctaatgttgtactaatgatattaa-attgaataatgcagCGGAGGTATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGATATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTA

upper sequence: PP1S34_101V6.1 (Physcomitrella patens), 3'ss of exon 13
lower sequence: AT5G41310.1 (Arabidopsis thaliana), 3'ss of exon 11
ttataatatagtatttttgtcgttcatgctctcaagaaatcgagcctcttggcttttaactcgtattttctgatgatagatttaatgttggtttgttcagAGGAGGTTTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTA
      |  |    | ||    ||  |    |  | | ||  |      | | |||  ||| ||| ||  | |  ||  || ||       |  || ||||||| |||||  |||| || |  ||  |||| || ||  |  | ||||| |  ||||||||||| |||||||||||||| ||||| ||||||||||| ||
-----gttcaagcctcttccacttattttatttcatatatgaaaatgtatagttttggacttgtaattaattaatatgtatata-------tgcgtgcagAGGAAGTTTTCTTAGATACTCGACCTATGATTCGATCCATTCTTGATGGCTACAATGTATGTATATTTGCTTATGGCCAGACGGGTTCTGGAAAGACTTA

upper sequence: PP1S34_101V6.1 (Physcomitrella patens), 3'ss of exon 13
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 3'ss of exon 14
---------ttataatatagtatttttgtcgtt-------------catgctctcaagaaatcgagcctcttggc----tttt----------aactcgtattttctgatgatagatttaatgt---tggtttgttcagAGGAGGTTTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTA
         |||||||||  ||| |||| | ||              ||   ||||          || ||| ||    ||||          ||||  ||  ||   |   |   ||  || |   | || |  ||||||||||| ||| ||||||| || ||||| || || |||||| | |||||||  ||||| ||||| ||||| ||||| ||||| || |||||||| |||||
gttatcttcttataatattttatatttggccttgtttctttatttgtatatcctcagatttctattccacttagcatgcttttgttaggaaagaacttttaacttactacctttatttgtatatacattgtgttatcagAGGAGGTATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttggcttttaactcgtattttctgatgatagatttaatgttggtttgttcagAGGAGGTTTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTA
                                              tttgttc  CT-rich tract
                           atgatagatttaat  TA-rich tract