1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaacttcttgcatcaatacctgtttacattgcgatttcttgtctgaaatgatttggaagtgttatctaacacctagtgtttgcccattactgcctcccagGTTTGCAGACGATGTGGCACCTGCACTGCCTTCGGTAAGAAGAAGCGAGGGGTGCCCCTTTAGATACAAACTCTGGTCACTTTACAATATGCCTTTTTTG
species | Physcomitrella patens |
transcript | PP1S31_242V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GACGGCAAATTTGCATAGGTTGTGGTGAACCAATTGGTTCCGCAGCAAAG GTTTGCAGACGATGTGGCACCTGCACTGCCTTCGGTAAGAAGAAGCGAGGGEST: gi|37835818|gb|BJ593830.1|BJ593830
genomic: GACGGCAAATTTGCATAGGTTGTGGTGAACCAATTGGTTCCGCAGCAAAGgtaacttctt ... tgcctcccagGTTTGCAGACGATGTGGCACCTGCACTGCCTTCGGTAAGAAGAAGCGAGGG
EST: GACGGCAAATTTGCATAGGTTGTGGTGAACCAATTGGTTCCGCAGCAAAG GTTTGCAGACGATGTGGCACCTGCACTGCCTTCGGTAAGAAGAAGCGAGGGEST: gi|37836129|gb|BJ594137.1|BJ594137
genomic: GACGGCAAATTTGCATAGGTTGTGGTGAACCAATTGGTTCCGCAGCAAAGgtaacttctt ... tgcctcccagGTTTGCAGACGATGTGGCACCTGCACTGCCTTCGGTAAGAAGAAGCGAGGG
EST: GACGGCAAATTTGCATAGGTTGTGGTGAACCAATTGGTTCCGCAGCAAAG GTTTGCAGACGATGTGGCACCTGCACTGCCTTCGGTAAGAAGAAGCGAGGG
genomic: GACGGCAAATTTGCATAGGTTGTGGTGAACCAATTGGTTCCGCAGCAAAGgtaacttctt ... tgcctcccagGTTTGCAGACGATGTGGCACCTGCACTGCCTTCGGTAAGAAGAAGCGAGGG
aaatgatttggaagtgttatctaacacctagtgtttgcccattactgcctcccagGTTTGCAGACGATGTGGCACCTGCACTGCCTTCGGTAAGAAGAAGCGAGGGGTGCCCCTTTAGATACAAACTCTGGTCACTTTACAATATGCCTTTTTTG
atctaac putative branch site (score: 4)
ctgcctccc putative PPT
ttatctaa TA-rich tract