1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ccactccctggtttcctccgtcataatcatttgggaatgtcctcgtgagatcaattttttcgttgttatcctgatgattaatttttaattctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGTTTGGCAAATAAAGTTACAAAGGCGTCAGAGACCAGTGCTTCTTTAGGCA
species | Physcomitrella patens |
transcript | PP1S314_45V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGTEST: gi|67575311|gb|BJ948135.1|BJ948135
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
EST: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGTEST: gi|162153969|gb|FC329476.1|FC329476
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
EST: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGTEST: gi|162163595|gb|FC339505.1|FC339505
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
EST: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGTEST: gi|162177167|gb|FC352596.1|FC352596
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
EST: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAG GTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
genomic: CACGAAAACTGGGATGCTCGGTCTTCCTTTTGTGGGATGATATAGTTGAGgtgagtatct ... ctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGT
tgagatcaattttttcgttgttatcctgatgattaatttttaattctgatgacagGTTCGGCCGAAAATGATTTTGACGCTGACAGCAAGCATCATGTTGTGGAGTTTGGCAAATAAAGTTACAAAGGCGTCAGAGACCAGTGCTTCTTTAGGCA
ttctgat putative branch site (score: 3)
atgattaatttttaat TA-rich tract