1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aatgttagttccccgtaagctctgttctttcatgataagcttcattataagtgagttcattatttttgacgttactcactaggatattttccacgatcagGTTGAAAGCATAGTCGAAGATTGGACGTCTGGAGGCTTAGGTTCTCAGTCCAGCTCGTGCCCTCCAGGAAGCCGAGGGCTTCAGGAGTTGTTGGAGGAAA
species | Physcomitrella patens |
transcript | PP1S302_37V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGGGGCCCACTGGGATCATTGGGACCAATCTCATTGACGCTGATGAAACG GTTGAAAGCATAGTCGAAGATTGGACGTCTGGAGGCTTAGGTTCTCAGTCCEST: gi|13315111|gb|BG408718.1|BG408718
genomic: GGGGGCCCACTGGGATCATTGGGACCAATCTCATTGACGCTGATGAAACGgtactgccat ... ccacgatcagGTTGAAAGCATAGTCGAAGATTGGACGTCTGGAGGCTTAGGTTCTCAGTCC
EST: GGGGGCCCACTGGGATCATTGGGACCAATCTTATTGACGCTGATGAAACG GGTTGAA-GCATAGTCGAAGATEST: gi|208393787|gb|DC946081.1|DC946081
genomic: GGGGGCCCACTGGGATCATTGGGACCAATCTCATTGACGCTGATGAAACGgtactgccat ... ccacgatcagG-TTGAAAGCATAGTCGAAGAT
EST: GGGGGCCCACTGGGATCATTGGGACCAATCTCATTGACGCTGATGAAACG GTTGAAAGCATAGTCGAAGATTGGACGTCTGGAGGCTTAGGTTCTCAGTCC
genomic: GGGGGCCCACTGGGATCATTGGGACCAATCTCATTGACGCTGATGAAACGgtactgccat ... ccacgatcagGTTGAAAGCATAGTCGAAGATTGGACGTCTGGAGGCTTAGGTTCTCAGTCC
tataagtgagttcattatttttgacgttactcactaggatattttccacgatcagGTTGAAAGCATAGTCGAAGATTGGACGTCTGGAGGCTTAGGTTCTCAGTCCAGCTCGTGCCCTCCAGGAAGCCGAGGGCTTCAGGAGTTGTTGGAGGAAA
tactcac putative branch site (score: 8)
tattttcc putative PPT
agttcattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgttagttccccgtaagctctgttctttcatgataagcttcattataagtgagttcattatttttgacgttactcactaggatattttccacgatcagGTTGAAAGCATAGTCGAAGATTGGACGTCTGGAGGCTTAGGTTCTCAGTCCAGCTCGTGCCCTCCAGGAAGCCGAGGGCTTCAGGAGTTGTTGGAGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA