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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaaactgtattcagtttctgcttgaggtctatcgcttcacttggtaggttgttgtaattgaagtgattatagtcattgtagtcattaatactaatcagcttgttgtgctggttatgtagTGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACCCTCCGACACCAACTCTTGCAACTCG

Basic information

species Physcomitrella patens
transcript PP1S28_184V6.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208352952|gb|DC926059.1|DC926059
EST:     AGCCAGCGGTCANCAGATCTGTTAGTCCAG                         TGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
genomic: AGCCAGCGGTCAACAGATCTGTTAGTCCAGgtagtaaact ... ggttatgtagTGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
EST: gi|162256738|gb|FC432632.1|FC432632
EST:     AAACCTCGTTTCTAAAGTGAAGCCAGCGGTCAACAGATCTGTTAGTCCAG                         TGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
genomic: AAACCTCGTTTCTAAAGTGAAGCCAGCGGTCAACAGATCTGTTAGTCCAGgtagtaaact ... ggttatgtagTGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
EST: gi|208398246|gb|DC912287.1|DC912287
EST:     AAACCTCGTTTCTAAAGTGAAGCCAGCGGTCAACAGATCTGTTAGTCCAG                         TGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
genomic: AAACCTCGTTTCTAAAGTGAAGCCAGCGGTCAACAGATCTGTTAGTCCAGgtagtaaact ... ggttatgtagTGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
EST: gi|162171439|gb|FC346714.1|FC346714
EST:     AAACCTCGTTTCTAAAGTGAAGCCAGCGGTCAACAGATCTGTTAGTCCAG                         TGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
genomic: AAACCTCGTTTCTAAAGTGAAGCCAGCGGTCAACAGATCTGTTAGTCCAGgtagtaaact ... ggttatgtagTGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
EST: gi|162255770|gb|FC431430.1|FC431430
EST:     -AACCTCGTTTCTAAAG-GAAGCCAGCGGTCAACAGATCTGTTAGTCCAG                         TGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
genomic: AAACCTCGTTTCTAAAGTGAAGCCAGCGGTCAACAGATCTGTTAGTCCAGgtagtaaact ... ggttatgtagTGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
EST: gi|162152204|gb|FC328183.1|FC328183
EST:     AACAGATCTGTTAGTCCAG                         TGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC
genomic: AACAGATCTGTTAGTCCAGgtagtaaact ... ggttatgtagTGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattatagtcattgtagtcattaatactaatcagcttgttgtgctggttatgtagTGTTTCCACCGACGCATTATGCCCGTGGTCCTGTAATCCCTGTTGTTAACCCTCCGACACCAACTCTTGCAACTCG
                        tactaat  putative branch site (score: 1)
                 tcattaatactaat  TA-rich tract