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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtacgaacgccaattgttaccggggattgtggacatttcgggtagactatgctttgctttcagttggaaacgcttcccgtgatgatgctgtagtaataggtcttaatttgtgcagGGACCGCTAATCAATGAGGCTTCGTTGAAAAAG

Basic information

species Physcomitrella patens
transcript PP1S279_72V6.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208391821|gb|DC937997.1|DC937997
EST:     CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAG                         GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
genomic: CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAGgttcgtacga ... atttgtgcagGGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
EST: gi|162188380|gb|FC364250.1|FC364250
EST:     CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAG                         GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
genomic: CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAGgttcgtacga ... atttgtgcagGGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
EST: gi|67695860|gb|BJ956093.1|BJ956093
EST:     CCCAGGGGTGACCCAG                         GGACCGCTAATCAATGAGGCTTCGTTGAAAAAAG
genomic: CCCAGGGGTGACCCAGgttcgtacga ... atttgtgcagGGACCGCTAATCAATGAGGCTTCGTTG-AAAAAG
EST: gi|37847436|gb|BJ605444.1|BJ605444
EST:     CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAG                         GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
genomic: CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAGgttcgtacga ... atttgtgcagGGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
EST: gi|208345206|gb|DC925476.1|DC925476
EST:     CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAG                         GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
genomic: CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAGgttcgtacga ... atttgtgcagGGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
EST: gi|37851842|gb|BJ609850.1|BJ609850
EST:     CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAG                         GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
genomic: CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAGgttcgtacga ... atttgtgcagGGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
EST: gi|162167720|gb|FC344034.1|FC344034
EST:     CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAG                         GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
genomic: CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAGgttcgtacga ... atttgtgcagGGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
EST: gi|208365822|gb|DC951057.1|DC951057
EST:     CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAG                         GGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
genomic: CAGTACAAAAGTTGCGTGTAGGTCATGGACTAGACCCAGGGGTGACCCAGgttcgtacga ... atttgtgcagGGACCGCTAATCAATGAGGCTTCGTTGAAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttggaaacgcttcccgtgatgatgctgtagtaataggtcttaatttgtgcagGGACCGCTAATCAATGAGGCTTCGTTGAAAAAG
                                        tcttaat  putative branch site (score: 3)
                                        tcttaattt  TA-rich tract