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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatgtgttgtatgaaaaacctgcgcttctatgtttgtcggatcttgtctttttcggaattcacagaattattgtgctaaactcttccctttgtctgcagGCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAAAGTGATGATGATACCTCCCACTTCATAAGTGCCGTGTGTTGGAAAAGTG

Basic information

species Physcomitrella patens
transcript PP1S264_64V6.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37841212|gb|BJ599220.1|BJ599220
EST:     AATATATAGGTTGTGGTAGTGTAACAAATGAGGTGTTTGTTTACCACAAG                         GCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAA
genomic: AATATATAGGTTGTGGTAGTGTAACAAATGAGGTGTTTGTTTACCACAAGgtaacgtttt ... ttgtctgcagGCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAA
EST: gi|162255325|gb|FC432051.1|FC432051
EST:     AATATATAGGTTGTGGTAGTGTAACAAATGAGGTGTTTGTTTACCACAAG                         GCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAA
genomic: AATATATAGGTTGTGGTAGTGTAACAAATGAGGTGTTTGTTTACCACAAGgtaacgtttt ... ttgtctgcagGCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAA
EST: gi|37850577|gb|BJ608585.1|BJ608585
EST:     AATATATAGGTTGTGGTAGTGTAACAAATGAGGTGTTTGTTTACCACAAG                         GCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAA
genomic: AATATATAGGTTGTGGTAGTGTAACAAATGAGGTGTTTGTTTACCACAAGgtaacgtttt ... ttgtctgcagGCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAA
EST: gi|37841051|gb|BJ599059.1|BJ599059
EST:     AATATATAGGTTGTGGTAGTGTAACAAATGAGGTGTTTGTTTACCACAAG                         GCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAA
genomic: AATATATAGGTTGTGGTAGTGTAACAAATGAGGTGTTTGTTTACCACAAGgtaacgtttt ... ttgtctgcagGCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctttttcggaattcacagaattattgtgctaaactcttccctttgtctgcagGCCATGTCGAAACCAACATGTTCGCACAGATTTGGATCCCTAGATGAGGAAAGTGATGATGATACCTCCCACTTCATAAGTGCCGTGTGTTGGAAAAGTG
                             tgctaaa  putative branch site (score: 2)
                                    ctcttccctttgtctg  CT-rich tract
                   agaattatt  TA-rich tract