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...taaatgttattagtcacattaggtgaattgcttgcaaattggtcacgattcgaatgattaattaaatcctcattatggatgttctgttggtttcatacagGCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTATGTTGTGCATTTGATTCATTCAGTGTTGCTGCCAAGCGCCAGATCATCA
species | Physcomitrella patens |
transcript | PP1S25_348V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTG GCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTAEST: gi|162272197|gb|FC448706.1|FC448706
genomic: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTGgtaactttta ... tttcatacagGCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTA
EST: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTG GCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTAEST: gi|37836470|gb|BJ594478.1|BJ594478
genomic: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTGgtaactttta ... tttcatacagGCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTA
EST: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTG GCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTAEST: gi|37820980|gb|BJ579046.1|BJ579046
genomic: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTGgtaactttta ... tttcatacagGCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTA
EST: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTG GCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTAEST: gi|37845516|gb|BJ603524.1|BJ603524
genomic: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTGgtaactttta ... tttcatacagGCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTA
EST: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTG GCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTA
genomic: TCACAGGAGATCTTGCCGAGAGCGTTCACACCACTGCCGAACACCTTCTGgtaactttta ... tttcatacagGCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTA
cgattcgaatgattaattaaatcctcattatggatgttctgttggtttcatacagGCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTATGTTGTGCATTTGATTCATTCAGTGTTGCTGCCAAGCGCCAGATCATCA
gattaat putative branch site (score: 4)
aatgattaattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatgttattagtcacattaggtgaattgcttgcaaattggtcacgattcgaatgattaattaaatcctcattatggatgttctgttggtttcatacagGCTGTTTATGAGCAACGAGTAAAGGAGGTGGCTATGGCTGTGCCTCTTTTATGTTGTGCATTTGATTCATTCAGTGTTGCTGCCAAGCGCCAGATCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA