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gtatcgtatatagcttaccttgatactttacaagcttggttcttcatccaaatcccaatgtcagtgtcacctactgctaaactcatttgataatagagcaagttcacttattgcgacgtgtcactttttgtatggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG
species | Physcomitrella patens |
transcript | PP1S25_21V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAG CCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCEST: gi|162211075|gb|FC387099.1|FC387099
genomic: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAGgtatcgtata ... tggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
EST: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAG CCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCEST: gi|162153221|gb|FC329003.1|FC329003
genomic: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAGgtatcgtata ... tggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
EST: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAG CCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCEST: gi|162181979|gb|FC356850.1|FC356850
genomic: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAGgtatcgtata ... tggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
EST: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAG CCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCEST: gi|162168390|gb|FC344704.1|FC344704
genomic: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAGgtatcgtata ... tggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
EST: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAG CCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCEST: gi|162276525|gb|FC452905.1|FC452905
genomic: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAGgtatcgtata ... tggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
EST: ACGGCCTTTCAG CCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCEST: gi|162211074|gb|FC387098.1|FC387098
genomic: ACGGCCTTTCAGgtatcgtata ... tggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
EST: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAG CCNTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCEST: gi|162257210|gb|FC433086.1|FC433086
genomic: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAGgtatcgtata ... tggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
EST: TCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAG CCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCEST: gi|162151649|gb|FC327778.1|FC327778
genomic: TCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAGgtatcgtata ... tggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
EST: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAG CCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
genomic: ATTTCCAGGGGCAAGTTTGCTGAGCTCGATGCAGATCAACGGCCTTTCAGgtatcgtata ... tggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATC
tgataatagagcaagttcacttattgcgacgtgtcactttttgtatggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG
atttgat putative branch site (score: 8)
tttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgtatatagcttaccttgatactttacaagcttggttcttcatccaaatcccaatgtcagtgtcacctactgctaaactcatttgataatagagcaagttcacttattgcgacgtgtcactttttgtatggctcgtagCCCTGAGGAGGAGAATTTTTTCAAGGAATCAGCAATGAATGCCTATACATCATTCCGAAATAAGGCTGCAGAGTCGAGATCAATGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA