1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aattactttttctttgattctgcattctaaacaccgaccactgctatcttgccagtagccttttcctgattcatttgcggtttattatttcgttttacagGGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGGAACGCTGCAGCAAGCAGAGTAGCTATCTGATTTTACTGTATTCTTATTG
species | Physcomitrella patens |
transcript | PP1S257_93V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAG GGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGGEST: gi|162251822|gb|FC427554.1|FC427554
genomic: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAGgtaagaacta ... cgttttacagGGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGG
EST: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAG GGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGGEST: gi|208366921|gb|DC951408.1|DC951408
genomic: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAGgtaagaacta ... cgttttacagGGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGG
EST: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAG GGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGGEST: gi|37847784|gb|BJ605792.1|BJ605792
genomic: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAGgtaagaacta ... cgttttacagGGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGG
EST: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAG GGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGGEST: gi|37825634|gb|BJ583700.1|BJ583700
genomic: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAGgtaagaacta ... cgttttacagGGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGG
EST: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAG GGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGG
genomic: GCTTTGCCTTATTCACACTTGAGTCGCTCCTCAGCATCTGGGTTCTGAAGgtaagaacta ... cgttttacagGGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGG
atcttgccagtagccttttcctgattcatttgcggtttattatttcgttttacagGGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGGAACGCTGCAGCAAGCAGAGTAGCTATCTGATTTTACTGTATTCTTATTG
tcctgat putative branch site (score: 5)
tttcgtttt putative PPT
tttattatttcgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattactttttctttgattctgcattctaaacaccgaccactgctatcttgccagtagccttttcctgattcatttgcggtttattatttcgttttacagGGTGTAGTTCAATACTTCAGAGGTGAAGGAGCAGCAGCAGAGATGAAGCGGAACGCTGCAGCAAGCAGAGTAGCTATCTGATTTTACTGTATTCTTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG