1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaagagtcgcaggtttctcctctttctcttctttttctgatattttgtctttctaatgaggaaagaatgaaatgcttgtttttgactgtgttgcgtatattttaaattcagcttaagctaattttttctgtgttttgaggacagAATATATACTGGTCAGATAGCGGAGATTTGGTTGCTATTGCGAGTGAAAGCTCGTTTTACATCTTGAAGTACAAC
species | Physcomitrella patens |
transcript | PP1S243_63V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGACTGGGCTGAATGTCGTGTGGTTCGAAGGATTGATGTCGTAGTCAAG AATATATACTGGTCAGATAGCGGAGATTTGGTTGCTATTGCGAGTGAAAGCEST: gi|162157189|gb|FC332823.1|FC332823
genomic: ATGACTGGGCTGAATGTCGTGTGGTTCGAAGGATTGATGTCGTAGTCAAGgtaagagtcg ... ttgaggacagAATATATACTGGTCAGATAGCGGAGATTTGGTTGCTATTGCGAGTGAAAGC
EST: ATGACTGGGCTGAATGTCGTGTGGTTCGAAGGATTGATGTCGTAGTCAAG AATATATACTGGTCAGATAGCGGAGATTTGGTTGCTATTGCGAGTGAAAGCEST: gi|100430581|gb|BY978291.1|BY978291
genomic: ATGACTGGGCTGAATGTCGTGTGGTTCGAAGGATTGATGTCGTAGTCAAGgtaagagtcg ... ttgaggacagAATATATACTGGTCAGATAGCGGAGATTTGGTTGCTATTGCGAGTGAAAGC
EST: ATGACTGGGCTGAATGTCGTGTGGTTCGAAGGATTGATGTCGTAGTCAAG AATATATACTGGTCAGATAGCGGAGATTTGGTTGCTATTGCGAGTGAAAGC
genomic: ATGACTGGGCTGAATGTCGTGTGGTTCGAAGGATTGATGTCGTAGTCAAGgtaagagtcg ... ttgaggacagAATATATACTGGTCAGATAGCGGAGATTTGGTTGCTATTGCGAGTGAAAGC
gttgcgtatattttaaattcagcttaagctaattttttctgtgttttgaggacagAATATATACTGGTCAGATAGCGGAGATTTGGTTGCTATTGCGAGTGAAAGCTCGTTTTACATCTTGAAGTACAAC
agctaat putative branch site (score: 4)
ttttttctgtgtttt CT-rich tract
tatattttaaattcag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtcgcaggtttctcctctttctcttctttttctgatattttgtctttctaatgaggaaagaatgaaatgcttgtttttgactgtgttgcgtatattttaaattcagcttaagctaattttttctgtgttttgaggacagAATATATACTGGTCAGATAGCGGAGATTTGGTTGCTATTGCGAGTGAAAGCTCGTTTTACATCTTGAAGTACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG