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...tcagcaatgacgagttagaggttttgcacatctttcttcagtgtagtggcgttttgatgtctaggtgatgttttgccttttactaattctcggaatgcagACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCAAGAATATCGTGATTGACTCAAAAGTAGACTATCCAGCTGCATGCAACGC
species | Physcomitrella patens |
transcript | PP1S22_40V6.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAG ACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCAEST: gi|162167111|gb|FC343587.1|FC343587
genomic: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAGgtgagtcaca ... cggaatgcagACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCA
EST: CACGAAGATTCCTGTTCTTGGTCATGCAG ACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCAEST: gi|162191467|gb|FC367171.1|FC367171
genomic: CACGAAGATTCCTGTTCTTGGTCATGCAGgtgagtcaca ... cggaatgcagACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCA
EST: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAG ACGGAGTCTGCCEST: gi|162210539|gb|FC386835.1|FC386835
genomic: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAGgtgagtcaca ... cggaatgcagACGGAGTCTGCC
EST: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAG ACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCAEST: gi|162167791|gb|FC344521.1|FC344521
genomic: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAGgtgagtcaca ... cggaatgcagACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCA
EST: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAG ACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCAEST: gi|162164179|gb|FC339602.1|FC339602
genomic: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAGgtgagtcaca ... cggaatgcagACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCA
EST: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAG ACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCAEST: gi|162235436|gb|FC411571.1|FC411571
genomic: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAGgtgagtcaca ... cggaatgcagACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCA
EST: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAG ACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCA
genomic: AGTTGCGCAGATCAAGGCAACCACGAAGATTCCTGTTCTTGGTCATGCAGgtgagtcaca ... cggaatgcagACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCA
gtggcgttttgatgtctaggtgatgttttgccttttactaattctcggaatgcagACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCAAGAATATCGTGATTGACTCAAAAGTAGACTATCCAGCTGCATGCAACGC
tactaat putative branch site (score: 15)
ttctc CT-rich tract
ttttactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagcaatgacgagttagaggttttgcacatctttcttcagtgtagtggcgttttgatgtctaggtgatgttttgccttttactaattctcggaatgcagACGGAGTCTGCCATGTCTATGTTGATACGGCTGCTGATCTAGAGAAAGCCAAGAATATCGTGATTGACTCAAAAGTAGACTATCCAGCTGCATGCAACGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - -ttgcaca