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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatttgcgtcattactttgttgtaaaagtcccagtgaaatcgtttgggtaaacatagttggtaaaaattgaacgccatttaagtaacaaggtcatgacatgacgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATGTCATATCATCAACGCTATCAAGATATTGTTATTCCTGAGGCTTATGAGC

Basic information

species Physcomitrella patens
transcript PP1S222_130V6.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7067204|gb|AW497059.1|AW497059
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|162220369|gb|FC395737.1|FC395737
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|162153066|gb|FC330096.1|FC330096
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|162208214|gb|FC384318.1|FC384318
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|15730173|gb|BI741714.1|BI741714
EST:     TGAAGCTCACG                         GAGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: TGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|162165174|gb|FC341676.1|FC341676
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|18339482|gb|BJ171509.1|BJ171509
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|37823531|gb|BJ581597.1|BJ581597
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|67698044|gb|BJ958277.1|BJ958277
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|162153065|gb|FC330095.1|FC330095
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|162259274|gb|FC435671.1|FC435671
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|37827352|gb|BJ585364.1|BJ585364
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|37844665|gb|BJ602673.1|BJ602673
EST:     AGTTCGTGATGCGTCTGCANCCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTNGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|162259275|gb|FC435672.1|FC435672
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|162276852|gb|FC452534.1|FC452534
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|37829780|gb|BJ587792.1|BJ587792
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|37851060|gb|BJ609068.1|BJ609068
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|67694438|gb|BJ954671.1|BJ954671
EST:     TGCAACCGAAGGAGGCGATGTNCATGAAGCTCACG                         GTGAAGGATCCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: TGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
EST: gi|67578605|gb|BJ950772.1|BJ950772
EST:     AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACG                         GTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG
genomic: AGTTCGTGATGCGTCTGCAACCGAAGGAGGCGATGTACATGAAGCTCACGgtttgtattt ... cgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtaaaaattgaacgccatttaagtaacaaggtcatgacatgacgagttacagGTGAAGGAACCCGGCTTGGATATGCGAGCCACACAGAGTGAGCTAGACATGTCATATCATCAACGCTATCAAGATATTGTTATTCCTGAGGCTTATGAGC
                       aagtaac  putative branch site (score: 2)
     aaaaattgaa  TA-rich tract