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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgatatgcatgtgctcattattattttgagttctggtataagggtgtaccctgtctatacattggtttatgcttgagaagttcttatttatattatgttttgttctgtgtcagGTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAG

Basic information

species Physcomitrella patens
transcript PP1S204_102V6.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162226796|gb|FC403829.1|FC403829
EST:     ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAG                         GTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
genomic: ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAGgtgcgatatg ... tctgtgtcagGTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
EST: gi|162152351|gb|FC328538.1|FC328538
EST:     ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAG                         GTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
genomic: ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAGgtgcgatatg ... tctgtgtcagGTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
EST: gi|162263592|gb|FC440102.1|FC440102
EST:     ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAG                         GTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
genomic: ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAGgtgcgatatg ... tctgtgtcagGTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
EST: gi|162168792|gb|FC344782.1|FC344782
EST:     ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAG                         GTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
genomic: ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAGgtgcgatatg ... tctgtgtcagGTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
EST: gi|162226810|gb|FC403830.1|FC403830
EST:     ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAG                         GTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
genomic: ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAGgtgcgatatg ... tctgtgtcagGTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
EST: gi|18333234|gb|BJ165248.1|BJ165248
EST:     ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAG                         GTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA
genomic: ACATATTTGTCTTCAACGAGGATTTTGTTGCTCCTCTTTTTCGTATTAAGgtgcgatatg ... tctgtgtcagGTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattggtttatgcttgagaagttcttatttatattatgttttgttctgtgtcagGTCAATGCTATACAGTTGAAGGAAACTGTAGAGGAAAATACGAGTACAACAGAGCGAGTGTTTCAGGATCGTCAATATCAG
                                       ttttgttct  CT-rich tract
                   aagttcttatttatat  TA-rich tract