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...ggaactcaaggaaagcttatctctgcttttcaagcttccagcacgttcctatcatccgattgccttccagttgctgaaaatcctttaattgtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTTCAAAGGAGACTCTCTGGACCAGTTTCCAGTGGATGGTGAACAGGACCA
species | Physcomitrella patens |
transcript | PP1S1_478V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTEST: gi|37850157|gb|BJ608165.1|BJ608165
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGT
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTEST: gi|162160845|gb|FC337667.1|FC337667
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGT
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTEST: gi|37841043|gb|BJ599051.1|BJ599051
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGT
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTEST: gi|37853139|gb|BJ611147.1|BJ611147
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGT
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTEST: gi|208385472|gb|DC953091.1|DC953091
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGT
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTEST: gi|208370567|gb|DC951603.1|DC951603
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGT
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTEST: gi|208394841|gb|DC915634.1|DC915634
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGT
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTEST: gi|67725738|gb|BJ975997.1|BJ975997
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGT
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTEST: gi|162212457|gb|FC388705.1|FC388705
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGT
EST: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAG GGACGGTGCTTTTGCTTGNGTGGTGGCGA
genomic: GAATGGGAGCGGGCAACCCGCACTCCTTTACATCGTGCCTTGTACTCTAGgtatttctgt ... gtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGA
ttcctatcatccgattgccttccagttgctgaaaatcctttaattgtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTTCAAAGGAGACTCTCTGGACCAGTTTCCAGTGGATGGTGAACAGGACCA
ctttaat putative branch site (score: 20)
aaaatcctttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaactcaaggaaagcttatctctgcttttcaagcttccagcacgttcctatcatccgattgccttccagttgctgaaaatcctttaattgtgtgagcagGGACGGTGCTTTTGCTTGGGTGGTGGCGAGGAGAATTGAAATCTTTGTGGTTCAAAGGAGACTCTCTGGACCAGTTTCCAGTGGATGGTGAACAGGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa