1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gttcagaaggcggcaattttctcgaaaatgctcgtttatggagagtttgcgaagctaattctgtacatgatgttgtggtttctccaatgaatgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGGAGGCTTTCTGCCGTTGCATTGAAGATCCAAACGCAGATTGCAACGTTT
species | Physcomitrella patens |
transcript | PP1S199_127V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGEST: gi|162195103|gb|FC371378.1|FC371378
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGEST: gi|37846883|gb|BJ604891.1|BJ604891
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGEST: gi|67722055|gb|BJ972314.1|BJ972314
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGEST: gi|162150713|gb|FC327609.1|FC327609
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGEST: gi|162192956|gb|FC371458.1|FC371458
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGC-GTACTTCCTATGGACEST: gi|162192955|gb|FC371457.1|FC371457
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGAC
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGEST: gi|162224470|gb|FC399846.1|FC399846
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGEST: gi|162194122|gb|FC369465.1|FC369465
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGEST: gi|37844425|gb|BJ602433.1|BJ602433
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
EST: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAG GTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
genomic: CCGTAACCATTGCTCGCTACGAAACTCCTGCTCACATCAACATTGACAAGgtgctccacc ... atgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAG
tttgcgaagctaattctgtacatgatgttgtggtttctccaatgaatgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGGAGGCTTTCTGCCGTTGCATTGAAGATCCAAACGCAGATTGCAACGTTT
agctaat putative branch site (score: 1)
taattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcagaaggcggcaattttctcgaaaatgctcgtttatggagagtttgcgaagctaattctgtacatgatgttgtggtttctccaatgaatgattgcagGTGGGTATCACACCAGATCGCCCTCTTCCTGCCGTACTTCCTATGGACGAGGAGGCTTTCTGCCGTTGCATTGAAGATCCAAACGCAGATTGCAACGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtaca