1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaaattcaattggccctcactatgctcctcccatctcttgccttgaatcgttattattgaaattatggaggttttgtccgttttctagaagtgggcgacaggtcccttgttcctaacgtacttttcacgactgtttcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTGGACATGTGCAACTCACTGATTTTGACCTGTCTTTCGTATCCTCACCTCG
species | Physcomitrella patens |
transcript | PP1S179_27V6.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGEST: gi|162164217|gb|FC342032.1|FC342032
genomic: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAG
EST: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTGEST: gi|18325669|gb|BJ157666.1|BJ157666
genomic: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTG
EST: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTGEST: gi|162220368|gb|FC395736.1|FC395736
genomic: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTG
EST: CGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTGEST: gi|162166374|gb|FC342356.1|FC342356
genomic: CGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTG
EST: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTGEST: gi|100375508|gb|BY948893.1|BY948893
genomic: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTG
EST: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTGEST: gi|162198645|gb|FC374791.1|FC374791
genomic: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTG
EST: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGAAA-CATCTTGGTCACAGCTAGEST: gi|162197657|gb|FC374491.1|FC374491
genomic: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAG
EST: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTGEST: gi|162199450|gb|FC373765.1|FC373765
genomic: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTG
EST: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTGEST: gi|162150868|gb|FC327348.1|FC327348
genomic: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTG
EST: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAG GAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTA
genomic: GTTTTATGCTGCTGAGGTGGTTCTTGCGCTAGAGTATCTACACTGCATAGgtaaattcaa ... tcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTA
gtgggcgacaggtcccttgttcctaacgtacttttcacgactgtttcgttttcagGAGTGGTCTACAGAGACCTGAAGCCAGAAAACATCTTGGTCACAGCTAGTGGACATGTGCAACTCACTGATTTTGACCTGTCTTTCGTATCCTCACCTCG
tcctaac putative branch site (score: 31)
tttcgttttc putative PPT
tactttt TA-rich tract