1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtgactaaatggattcctttattggttaaactatatgtgtttatttccgaaacaatccctttcagtgtgcagatttgttgtcacctcaccatagtcatattcctgatcctatgagatatatgcagGTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCATTTCAGATCAAATTACAGTGATTCAGCCAGTCTCTCCCCAAAAGCGTCTC
species | Physcomitrella patens |
transcript | PP1S169_48V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AAGCCACGCTAATGGTCATTACTATCATCATTGTCCTCTTCAGCACTATT GTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCATEST: gi|162176885|gb|FC353367.1|FC353367
genomic: AAGCCACGCTAATGGTCATTACTATCATCATTGTCCTCTTCAGCACTATTgtaagtgact ... atatatgcagGTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCAT
EST: AAGCCACGCTAATGGTCATTACTATCATCATTGTCCTCTTCAGCACTATT GTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCATEST: gi|162160103|gb|FC335973.1|FC335973
genomic: AAGCCACGCTAATGGTCATTACTATCATCATTGTCCTCTTCAGCACTATTgtaagtgact ... atatatgcagGTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCAT
EST: CATTGTCCTCTTCAGCACTATT GTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCATEST: gi|162195588|gb|FC371889.1|FC371889
genomic: CATTGTCCTCTTCAGCACTATTgtaagtgact ... atatatgcagGTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCAT
EST: TCATTACTATCATCATTGTCCTCTTCAGCACTATT GTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCATEST: gi|162255348|gb|FC432074.1|FC432074
genomic: TCATTACTATCATCATTGTCCTCTTCAGCACTATTgtaagtgact ... atatatgcagGTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCAT
EST: AAGCCACGCTAATGGTCATTACTATCATCATTGTCCTCTTCAGCACTATT GTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCATEST: gi|37839293|gb|BJ597301.1|BJ597301
genomic: AAGCCACGCTAATGGTCATTACTATCATCATTGTCCTCTTCAGCACTATTgtaagtgact ... atatatgcagGTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCAT
EST: TGGTCATTACTATCATCATTGTCNTCTTCAGCACTATT GTGTTCGGCACTGCAACCAAGCNTCTTATTAGCTGGCTACTTCCACCTCAT
genomic: TGGTCATTACTATCATCATTGTCCTCTTCAGCACTATTgtaagtgact ... atatatgcagGTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCAT
agatttgttgtcacctcaccatagtcatattcctgatcctatgagatatatgcagGTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCATTTCAGATCAAATTACAGTGATTCAGCCAGTCTCTCCCCAAAAGCGTCTC
tcctgat putative branch site (score: 3)
agatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgactaaatggattcctttattggttaaactatatgtgtttatttccgaaacaatccctttcagtgtgcagatttgttgtcacctcaccatagtcatattcctgatcctatgagatatatgcagGTGTTCGGCACTGCAACCAAGCCTCTTATTAGCTGGCTACTTCCACCTCATTTCAGATCAAATTACAGTGATTCAGCCAGTCTCTCCCCAAAAGCGTCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA