1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gcctttttaatctgctagtgacaagtgggttccaattggtgtcgattctgatctgaagtttctttttcttacaactaatgttattgcgtatctcatgcagGTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACATCAAAGCTTTTGCACTTAGCATGGCATCCAGCAGCGAATGTGATCGCGTG
species | Physcomitrella patens |
transcript | PP1S167_51V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGTCGACTAGCCAATCTTGCTCGTGGTCGGCGTGATAACCGTCGAG GTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACATEST: gi|37836637|gb|BJ594645.1|BJ594645
genomic: TGGAAGTCGACTAGCCAATCTTGCTCGTGGTCGGCGTGATAACCGTCGAGgtcagcgtct ... tctcatgcagGTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACAT
EST: TGGAAGTCGACTAGCCAATCTTGCTCGTGGTCGGCGTGATAACCGTCGAG GTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACATEST: gi|162181126|gb|FC357285.1|FC357285
genomic: TGGAAGTCGACTAGCCAATCTTGCTCGTGGTCGGCGTGATAACCGTCGAGgtcagcgtct ... tctcatgcagGTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACAT
EST: TGGAAGTCGACTAGCCAATCTTGCTCGTGGTCGGCGTGATAACCGTCGAG GTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACATEST: gi|162164628|gb|FC341923.1|FC341923
genomic: TGGAAGTCGACTAGCCAATCTTGCTCGTGGTCGGCGTGATAACCGTCGAGgtcagcgtct ... tctcatgcagGTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACAT
EST: TGGAAGTCGACTAGCCAATCTTGCTCGTGGTCGGCGTGATAACCGTCGAG GTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACAT
genomic: TGGAAGTCGACTAGCCAATCTTGCTCGTGGTCGGCGTGATAACCGTCGAGgtcagcgtct ... tctcatgcagGTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACAT
ttctgatctgaagtttctttttcttacaactaatgttattgcgtatctcatgcagGTGGAGAAAGCCCAGGTATAGATTTGAATGGGGGAGTGCAAGATTTCACATCAAAGCTTTTGCACTTAGCATGGCATCCAGCAGCGAATGTGATCGCGTG
aactaat putative branch site (score: 11)
taatgttatt TA-rich tract