1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagttaatagttcatttcctgacacgtcgttgcgaacagttgtgtagaaaccatcgaacttattcttagctgaacctccctttctgtggcacacagttattgattggtaggtatacaccgttgggatccagtttgtgctggaaatcaaatatgtttctaatggaagttcggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCCTTTTCTTCGAATAAACTTTCTGTAGCTGTTGACGATTCCGACGGTTGGT
species | Physcomitrella patens |
transcript | PP1S11_325V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAG GCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCCEST: gi|162184915|gb|FC361425.1|FC361425
genomic: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAGgtgagttaat ... cggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCC
EST: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAG GCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCCEST: gi|37839948|gb|BJ597956.1|BJ597956
genomic: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAGgtgagttaat ... cggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCC
EST: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAG GCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCCEST: gi|162216246|gb|FC392663.1|FC392663
genomic: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAGgtgagttaat ... cggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCC
EST: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAG GCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCCEST: gi|162167383|gb|FC343086.1|FC343086
genomic: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAGgtgagttaat ... cggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCC
EST: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAG GCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCCEST: gi|162167382|gb|FC343085.1|FC343085
genomic: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAGgtgagttaat ... cggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCC
EST: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAG GCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCCEST: gi|18333146|gb|BJ165160.1|BJ165160
genomic: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAGgtgagttaat ... cggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCC
EST: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAG GCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCC
genomic: ACTCTGATGTTGTGGCTGCTGTTAATGTCGCTCGGATCAGTGGCTGGAAGgtgagttaat ... cggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCC
ggatccagtttgtgctggaaatcaaatatgtttctaatggaagttcggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCCTTTTCTTCGAATAAACTTTCTGTAGCTGTTGACGATTCCGACGGTTGGT
ttctaat putative branch site (score: 15)
aaatcaaatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttaatagttcatttcctgacacgtcgttgcgaacagttgtgtagaaaccatcgaacttattcttagctgaacctccctttctgtggcacacagttattgattggtaggtatacaccgttgggatccagtttgtgctggaaatcaaatatgtttctaatggaagttcggtgtttagGCTTTGACACTTCATTTGGAAGAATCACAAGAACCTCGAAGTATGAAGGCCTTTTCTTCGAATAAACTTTCTGTAGCTGTTGACGATTCCGACGGTTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT