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...tcatgttaatgattcgtcctttttgacatgatagacatcattttctgactgcatatgtcaatgtcgatgggggattttgttttgttcggttttgttacagATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAGGCGGAGGAGAAAAACAGGAATGAAGCTTCACGATCCGTGGTTATCGCAT
species | Physcomitrella patens |
transcript | PP1S118_125V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGATCAGTCATTTGCCAATGCACCTGCAAATTTTGACGATGAAGAGCGG ATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAGEST: gi|37843979|gb|BJ601987.1|BJ601987
genomic: ATGATCAGTCATTTGCCAATGCACCTGCAAATTTTGACGATGAAGAGCGGgtaagctcca ... tttgttacagATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAG
EST: ATGATCAGTCATTTGCCAATGCACCTGCAAATTTTGACGATGAAGAGCGG ATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAGEST: gi|162168181|gb|FC343871.1|FC343871
genomic: ATGATCAGTCATTTGCCAATGCACCTGCAAATTTTGACGATGAAGAGCGGgtaagctcca ... tttgttacagATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAG
EST: ATGATCAGTCATTTGCCAATGCACCTGCAAATTTTGACGATGAAGAGCGG ATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAGEST: gi|18337504|gb|BJ169528.1|BJ169528
genomic: ATGATCAGTCATTTGCCAATGCACCTGCAAATTTTGACGATGAAGAGCGGgtaagctcca ... tttgttacagATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAG
EST: ATGATCAGTCATTTGCCAATGCACCTGCAAATTTTGACGATGAAGAGCGG ATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAG
genomic: ATGATCAGTCATTTGCCAATGCACCTGCAAATTTTGACGATGAAGAGCGGgtaagctcca ... tttgttacagATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAG
tgactgcatatgtcaatgtcgatgggggattttgttttgttcggttttgttacagATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAGGCGGAGGAGAAAAACAGGAATGAAGCTTCACGATCCGTGGTTATCGCAT
ttctgac putative branch site (score: 9)
ttttgtt putative PPT
attttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgttaatgattcgtcctttttgacatgatagacatcattttctgactgcatatgtcaatgtcgatgggggattttgttttgttcggttttgttacagATGGTTATGGAGGCTATTGCAGCTTCTCTGCATGATGTAGACTTAAAGGAGGCGGAGGAGAAAAACAGGAATGAAGCTTCACGATCCGTGGTTATCGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - ctgcata