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gtacgtattcactgtgactgctcttatctttttaaaagctttaaagcattagaacatttttccttgctgtaagtaatggtacaggttaattttacatcttccctaatacgaaggtcttggtggtaacgatgacccattgacgcgatcttgatcatttgacctggaactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGATCTCCATTTTAGATTAGTAAGATTTTGTGTAGTGATGCTGGTCCCGACA
species | Physcomitrella patens |
transcript | PP1S110_13V6.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162193091|gb|FC369929.1|FC369929
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|37850772|gb|BJ608780.1|BJ608780
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162193090|gb|FC369928.1|FC369928
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCTTTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTTTTTCCTGGAATGGCTGGAEST: gi|162248204|gb|FC423667.1|FC423667
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162179084|gb|FC356485.1|FC356485
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162179083|gb|FC356484.1|FC356484
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|37824986|gb|BJ583052.1|BJ583052
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|37853301|gb|BJ611309.1|BJ611309
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: NGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGNTGGAEST: gi|208395403|gb|DC924471.1|DC924471
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162176402|gb|FC353587.1|FC353587
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTCTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162184457|gb|FC359203.1|FC359203
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162166027|gb|FC340423.1|FC340423
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|37836231|gb|BJ594239.1|BJ594239
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|208349470|gb|DC921944.1|DC921944
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162169704|gb|FC345241.1|FC345241
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162183778|gb|FC360695.1|FC360695
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162183777|gb|FC360694.1|FC360694
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|162244160|gb|FC419811.1|FC419811
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGAEST: gi|208396401|gb|DC920067.1|DC920067
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
EST: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAG GTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
genomic: TGTTCCACAAATCCATTAAATATTACTAAGTACCAGAATGACAAGGAGgtacgtattc ... aactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGA
gtggtaacgatgacccattgacgcgatcttgatcatttgacctggaactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGATCTCCATTTTAGATTAGTAAGATTTTGTGTAGTGATGCTGGTCCCGACA
atcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtattcactgtgactgctcttatctttttaaaagctttaaagcattagaacatttttccttgctgtaagtaatggtacaggttaattttacatcttccctaatacgaaggtcttggtggtaacgatgacccattgacgcgatcttgatcatttgacctggaactatgcagGTTATGGACGTTTTCAATAAAATTTCCGAGTTATTTCCTGGAATGGCTGGATCTCCATTTTAGATTAGTAAGATTTTGTGTAGTGATGCTGGTCCCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG