Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtcgtgcactcacctgttttatgtacttgtaagaatttatccgatattggccattgcagtttaacagttcatatagtgtaggtccgttttgttaactgagttcgttttttctgttccatggtgtatttaccactacttgtggttctaaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCGGTACAG

Basic information

species Physcomitrella patens
transcript PP1S88_36V6.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67699116|gb|BJ959349.1|BJ959349
EST:     CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG                         ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGA---
EST: gi|208356042|gb|DC957286.1|DC957286
EST:     CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG                         ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
EST: gi|162158449|gb|FC334244.1|FC334244
EST:     CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG                         ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGA---
EST: gi|18341813|gb|BJ173848.1|BJ173848
EST:     CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG                         ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
EST: gi|162235734|gb|FC411037.1|FC411037
EST:     CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG                         ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGA---
EST: gi|67700065|gb|BJ960298.1|BJ960298
EST:     CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAG                         ATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG
genomic: CGTGATCGTGGCAAGTCGAATCGAGATTATGATAGTCGAAGTCGGAGAAGgtcagtcgtg ... taaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgttttttctgttccatggtgtatttaccactacttgtggttctaaaaagcagATCACGGTCGCGATCAAGGGAACGTTCCAGAGATAGAGACAGGAGTGATCGGTACAG
                                          ttctaaa  putative branch site (score: 2)
                                          ttctaaaaa  TA-rich tract