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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagtcaatttaatcgtgttggatggtgttcactatttttccctgattgtacgaatattcactcttcatttggttcagtaatgatcagtcttagacttccagcgaggtcaacaatgcaactcatcctttgtttaggctgacttaatttttgcactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG

Basic information

species Physcomitrella patens
transcript PP1S83_234V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162247261|gb|FC423059.1|FC423059
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
EST: gi|162250016|gb|FC427117.1|FC427117
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
EST: gi|18338563|gb|BJ170587.1|BJ170587
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
EST: gi|37826149|gb|BJ584161.1|BJ584161
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
EST: gi|162154986|gb|FC331404.1|FC331404
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
EST: gi|162159567|gb|FC335745.1|FC335745
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
EST: gi|162250017|gb|FC427118.1|FC427118
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
EST: gi|162247262|gb|FC423060.1|FC423060
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
EST: gi|162159566|gb|FC335744.1|FC335744
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
EST: gi|37837126|gb|BJ595134.1|BJ595134
EST:     TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAG                         CTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT
genomic: TCAAGATTGGAAAGATTTTGATACATCGCGAAGGAGATAATGGGCAACAGgtatcagtca ... cactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaacaatgcaactcatcctttgtttaggctgacttaatttttgcactttgcagCTTATCTATGAAAAACTGCCCCGTGATATAGCCGATCGGCATGTTCTACTTATGGACCCTATTTTGGGAACAG
                                       tttttgc  CT-rich tract
                                 acttaattttt  TA-rich tract