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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggtcatacatgtggtggttagagactatgaagaaacgtcaggtgcactaaagttagatatctactctgaactaactctaattgttggccacacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG

Basic information

species Physcomitrella patens
transcript PP1S7_147V6.3
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18334039|gb|BJ166055.1|BJ166055
EST:     CATGACACTGGATCCACTCAG                         GGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
genomic: CATGACACTGGATCCACTCAGgttttggaga ... acacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
EST: gi|67695856|gb|BJ956089.1|BJ956089
EST:     GTGCTGTCACTTTTATTGACAACCATGACACTGGATCCACTCAG                         GGATTTTGGCCGTTTCCATGGGANCACGTTGCACAG
genomic: GTGCTGTCACTTTTATTGACAACCATGACACTGGATCCACTCAGgttttggaga ... acacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
EST: gi|37825955|gb|BJ584021.1|BJ584021
EST:     TTCCCGTGCTGTCACTTTTATTGACAACCATGACACTGGATCCACTCAG                         GGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
genomic: TTCCCGTGCTGTCACTTTTATTGACAACCATGACACTGGATCCACTCAGgttttggaga ... acacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
EST: gi|37822374|gb|BJ580440.1|BJ580440
EST:     NTTCCCGTGCTGTCACTTTTATTGACANCCATGACACTGGATCCACTCAG                         GGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
genomic: CTTCCCGTGCTGTCACTTTTATTGACAACCATGACACTGGATCCACTCAGgttttggaga ... acacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
EST: gi|37824706|gb|BJ582772.1|BJ582772
EST:     CCCGTGCTGTCACTTTTATTGACANCCATGACACTGGATCCACTCAG                         GGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
genomic: CCCGTGCTGTCACTTTTATTGACAACCATGACACTGGATCCACTCAGgttttggaga ... acacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
EST: gi|37834555|gb|BJ592567.1|BJ592567
EST:     ACTGGATCCACTCAG                         GGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
genomic: ACTGGATCCACTCAGgttttggaga ... acacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
EST: gi|18341353|gb|BJ173388.1|BJ173388
EST:     TTGACAACCATGACACTGGATCCACTCAG                         GGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
genomic: TTGACAACCATGACACTGGATCCACTCAGgttttggaga ... acacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
EST: gi|37822493|gb|BJ580559.1|BJ580559
EST:     NTTCCCGTGCTGTCACTTTTATTGACAACCATGACACTGGATCCACTCAG                         GGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
genomic: CTTCCCGTGCTGTCACTTTTATTGACAACCATGACACTGGATCCACTCAGgttttggaga ... acacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactaaagttagatatctactctgaactaactctaattgttggccacacttgcagGGATTTTGGCCGTTTCCATGGGACCACGTTGCACAG
        ttagatat  TA-rich tract