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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagactcttatcactttttatcctgtaagaacttagacttcaatcgattcacttctccaagaatgttcgcaattcaaaaattagtgtcgattcaaatcacacagaataaatatcctgttgtatgatagtgctggggatattaacctgacatttggctgatttgatttgcagGGATATATATCACTGCCCATCCTGCAATCTTTGCCGTGTTGGTAAGGGTTTAGGCATTGATTTTTTTCATTGCATGACATGCAACAGTTGCATGGCTATG

Basic information

species Physcomitrella patens
transcript PP1S77_113V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162239396|gb|FC414013.1|FC414013
EST:     GACAATGACAACAG                         GGATATATATCACTGCCCATCCTGCAATCTTTGCCGTGTTGGTAAGGGTTT
genomic: GACAATGACAACAGgtgaagactc ... tgatttgcagGGATATATATCACTGCCCATCCTGCAATCTTTGCCGTGTTGGTAAGGGTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtatgatagtgctggggatattaacctgacatttggctgatttgatttgcagGGATATATATCACTGCCCATCCTGCAATCTTTGCCGTGTTGGTAAGGGTTTAGGCATTGATTTTTTTCATTGCATGACATGCAACAGTTGCATGGCTATG
                                          atttgattt  TA-rich tract