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gtatgatgttttatctctgtttttgctggggaattattgtttcttaaagcaagtgagcgaaatactaatttaatgatatcaatcctcaaagtttggcatattctcttgttcataatcagagagtcagggtgctgttactaatggatagacaactgtcagttgtgttcagGCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGGCGATGTACATGAAACTAACG
species | Physcomitrella patens |
transcript | PP1S73_244V6.3 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GTCGAGATACGTGTGCAGTTNNAGG-ACACTCCTGGTGACATCTTTAAT- GCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGEST: gi|37841809|gb|BJ599817.1|BJ599817
genomic: GTCGAAATACGTGTGCAGTTT-AGGGACACTCCTGGTGACATCTTTAATTgtatgatgtt ... ttgtgttcagGCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCG
EST: AGTCGAAATACGTGTGCAGTTTAGGGACACTCCTGGTGACATCTTTAATT GCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGGEST: gi|208380876|gb|DC923358.1|DC923358
genomic: AGTCGAAATACGTGTGCAGTTTAGGGACACTCCTGGTGACATCTTTAATTgtatgatgtt ... ttgtgttcagGCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGG
EST: AGTCGAAATACGTGTGCAGTTTAGGGACACTCCTGGTGACATCTTTAATT GCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGG
genomic: AGTCGAAATACGTGTGCAGTTTAGGGACACTCCTGGTGACATCTTTAATTgtatgatgtt ... ttgtgttcagGCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGG
atcagagagtcagggtgctgttactaatggatagacaactgtcagttgtgttcagGCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGGCGATGTACATGAAACTAACG
tactaat putative branch site (score: 1)
ttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgttttatctctgtttttgctggggaattattgtttcttaaagcaagtgagcgaaatactaatttaatgatatcaatcctcaaagtttggcatattctcttgttcataatcagagagtcagggtgctgttactaatggatagacaactgtcagttgtgttcagGCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGGCGATGTACATGAAACTAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG