1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaaatgccaccacttctatttcatcaattgtagagttaccagttgtttactcttgctgcatttcgcatatttttctagaggctgcttactgtcaaggataaaatacgggatcgttcagttcaatgaccacgttgggtaaacagttatcagtcacatattgttgaagccttctcgtgtttgatcaaatgcagTATTCGTGGGGATCAACAGCATTTTGTGCGAAGAGATGAGTTGCGG
species | Physcomitrella patens |
transcript | PP1S73_244V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TATGAAGAAGTTGTCATACCAGAGGCTTACGAGCGTCTAATTCTTGATAC TATTCGTGGGGATCAACAGCATTTTGTGCGAAGAGATGAGTTGCGGEST: gi|208380876|gb|DC923358.1|DC923358
genomic: TATGAAGAAGTTGTCATACCAGAGGCTTACGAGCGTCTAATTCTTGATACgtaaatgcca ... tcaaatgcagTATTCGTGGGGATCAACAGCATTTTGTGCGAAGAGATGAGTTGCGG
EST: TATGAAGAAGTTGTCATACCAGAGGCTTACGAGCGTCTAATTCTTGATAC TATTCGTGGGGATCAACAGCATTTTGTGCGAAGAGATGAGTTGCGG
genomic: TATGAAGAAGTTGTCATACCAGAGGCTTACGAGCGTCTAATTCTTGATACgtaaatgcca ... tcaaatgcagTATTCGTGGGGATCAACAGCATTTTGTGCGAAGAGATGAGTTGCGG
taaacagttatcagtcacatattgttgaagccttctcgtgtttgatcaaatgcagTATTCGTGGGGATCAACAGCATTTTGTGCGAAGAGATGAGTTGCGG
gtttgat putative branch site (score: 5)
atattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgccaccacttctatttcatcaattgtagagttaccagttgtttactcttgctgcatttcgcatatttttctagaggctgcttactgtcaaggataaaatacgggatcgttcagttcaatgaccacgttgggtaaacagttatcagtcacatattgttgaagccttctcgtgtttgatcaaatgcagTATTCGTGGGGATCAACAGCATTTTGTGCGAAGAGATGAGTTGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG