1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgtatgcctgaacatcaaggttacactaaatctcagagtcaggtgtccgcgtcgtttagttggttcagcccaactcacaatttgatgtgattgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATGGCACTCTCTTACAGTGCCGGTCGGGCTGGTGGGACGATGACCGGTGTG
species | Physcomitrella patens |
transcript | PP1S73_243V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATEST: gi|16137456|gb|BI894320.1|BI894320
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
EST: GAGCGTATTCCCTGTTCAGAGAAAACATGGCCTCGTTTGGACTTTCTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCEST: gi|162244459|gb|FC422632.1|FC422632
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCC
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATEST: gi|162155914|gb|FC332463.1|FC332463
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAG AATGGGAAATCTTACTTTCATGAAGCCAGACCACGEST: gi|67692973|gb|BJ953206.1|BJ953206
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACG
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATEST: gi|162155913|gb|FC332462.1|FC332462
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATEST: gi|162244458|gb|FC422631.1|FC422631
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATEST: gi|162171164|gb|FC347778.1|FC347778
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATEST: gi|162160112|gb|FC335982.1|FC335982
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATEST: gi|67694754|gb|BJ954987.1|BJ954987
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATEST: gi|208348677|gb|DC926352.1|DC926352
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATEST: gi|162204514|gb|FC381937.1|FC381937
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
EST: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAA AATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
genomic: GAGCGTATTCCCTGTTCAGAGAAGACATGGCCTCGTTTGGACTTTTTCAAgtgagttact ... ttgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCAT
tccgcgtcgtttagttggttcagcccaactcacaatttgatgtgattgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATGGCACTCTCTTACAGTGCCGGTCGGGCTGGTGGGACGATGACCGGTGTG
aatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtatgcctgaacatcaaggttacactaaatctcagagtcaggtgtccgcgtcgtttagttggttcagcccaactcacaatttgatgtgattgtgagcagAATGGGAAATCTTACTTTCATGAAGCCAGACCACGCCAAATACCCCTCCATGGCACTCTCTTACAGTGCCGGTCGGGCTGGTGGGACGATGACCGGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - -ctgaaca