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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctcttgacattcatccatgaaagaattttaattctcagaaatattgagaattcaaagacctgcttatgtacgtcatggtagctttaacaaccactaattacatcttactgattttagCCACCAGCAAACTTGCCTCTCCTGAAGGATCCAGACGAAGCTTCTACCAACACTGCGAAAGTAATGGGGGATCTGAAATTTGCTAAATTCTCAAAG

Basic information

species Physcomitrella patens
transcript PP1S6_422V6.1
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208380379|gb|DC907704.1|DC907704
EST:     ACGCANCAATGCATGGTCCTCGTCCTGATGATGACATTGTGTCCTTTCCG                         CCNACCANCAAACTTGCCTCTCCTGAAG
genomic: ACGCAGCAATGCATGGTCCTCGTCCTGATGATGACATTGTGTCCTTTCCGgtgagctctt ... ctgattttagCC-ACCAGCAAACTTGCCTCTCCTGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatgtacgtcatggtagctttaacaaccactaattacatcttactgattttagCCACCAGCAAACTTGCCTCTCCTGAAGGATCCAGACGAAGCTTCTACCAACACTGCGAAAGTAATGGGGGATCTGAAATTTGCTAAATTCTCAAAG
                                           tactgat  putative branch site (score: 2)
                                        tcttact  CT-rich tract
                                taattacat  TA-rich tract