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gtatccgtccttcttactgaatgaaaattcttttcaccactatcatctgctcttcatcaatcatagtttgagatatcacaatccgatatgtactccagatagtggctcctatgttacttatggggttatatgtggactctctcagCCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATCTTGTCTTCGTGTTTAGGAAG
species | Physcomitrella patens |
transcript | PP1S49_100V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAAGGATTTTGCAGATCTGATGCGCAAACTAGGAGCGCTTGGTGATTCTG CCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATCEST: gi|37851526|gb|BJ609534.1|BJ609534
genomic: AAAGGATTTTGCAGATCTGATGCGCAAACTAGGAGCGCTTGGTGATTCTGgtatccgtcc ... actctctcagCCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATC
EST: AAAGGATTTTGCAGATCTGATGCGCAAACTAGGAGCGCTTGGTGATTCTG CCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATCEST: gi|208371348|gb|DC944512.1|DC944512
genomic: AAAGGATTTTGCAGATCTGATGCGCAAACTAGGAGCGCTTGGTGATTCTGgtatccgtcc ... actctctcagCCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATC
EST: AAAGGATTTTGCAGATCTGATGCGCAAACTAGGAGCGCTTGGTGATTCTG CCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATCEST: gi|37830663|gb|BJ588675.1|BJ588675
genomic: AAAGGATTTTGCAGATCTGATGCGCAAACTAGGAGCGCTTGGTGATTCTGgtatccgtcc ... actctctcagCCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATC
EST: AAAGGATTTTGCAGATCTGATGCGCAAACTAGGAGCGCTTGGTGATTCTG CCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATCEST: gi|162185815|gb|FC362371.1|FC362371
genomic: AAAGGATTTTGCAGATCTGATGCGCAAACTAGGAGCGCTTGGTGATTCTGgtatccgtcc ... actctctcagCCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATC
EST: AAAGGATTTTGCAGATTTGATGCGCAAACTAGGAGCGCTTGGTGATTCTG CCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATC
genomic: AAAGGATTTTGCAGATCTGATGCGCAAACTAGGAGCGCTTGGTGATTCTGgtatccgtcc ... actctctcagCCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATC
tactccagatagtggctcctatgttacttatggggttatatgtggactctctcagCCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATCTTGTCTTCGTGTTTAGGAAG
ctctctc CT-rich tract
ttacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccgtccttcttactgaatgaaaattcttttcaccactatcatctgctcttcatcaatcatagtttgagatatcacaatccgatatgtactccagatagtggctcctatgttacttatggggttatatgtggactctctcagCCGCTGGCGATGCTATCACAGACGATGAGTGGGATGCTGCTTACATCTATCTTGTCTTCGTGTTTAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT