1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...agggccataagtcattgttttcttagacaattacgcatgctggtattttgtagtatcctctttgctgtgggtgtgaatactaatttttttgtgtgcgcagTGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAGGAGAGTTGGAGCCTATATCCGGAACCGTGTTTAGATCGGCGAAG
species | Physcomitrella patens |
transcript | PP1S47_97V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTGTTCAAGAATTTAAATTTTGGAATTGACCTCGACAGTCGATTAGCAA TGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAGEST: gi|162187556|gb|FC363818.1|FC363818
genomic: ACTGTTCAAGAATTTAAATTTTGGAATTGACCTCGACAGTCGATTAGCAAgtaaacttct ... gtgtgcgcagTGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAG
EST: GACCTCGACAGTCGATTAGCAA TGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAGEST: gi|37836283|gb|BJ594291.1|BJ594291
genomic: GACCTCGACAGTCGATTAGCAAgtaaacttct ... gtgtgcgcagTGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAG
EST: GACAGTCGATTAGCAA TGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAGEST: gi|162174579|gb|FC350234.1|FC350234
genomic: GACAGTCGATTAGCAAgtaaacttct ... gtgtgcgcagTGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAG
EST: ACTGTTCAAGAATTTAAATTTT-GAATTGACCTCGACAGTCGATTAGCAA TGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAG
genomic: ACTGTTCAAGAATTTAAATTTTGGAATTGACCTCGACAGTCGATTAGCAAgtaaacttct ... gtgtgcgcagTGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAG
ttttgtagtatcctctttgctgtgggtgtgaatactaatttttttgtgtgcgcagTGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAGGAGAGTTGGAGCCTATATCCGGAACCGTGTTTAGATCGGCGAAG
tactaat putative branch site (score: 1)
tttttttgt CT-rich tract
tgaatactaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggccataagtcattgttttcttagacaattacgcatgctggtattttgtagtatcctctttgctgtgggtgtgaatactaatttttttgtgtgcgcagTGGTGGGTCCAAATGGTATTGGAAAGTCTACATTGTTGAAGTTAATTTCAGGAGAGTTGGAGCCTATATCCGGAACCGTGTTTAGATCGGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG