1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...acaaatggctgggcaattcttttcctcagtaacctggtctatgcggtgactatctgccgcatatttgatatgcctcaaatcttgctgtggtcgtattcagATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTAACGCAGGGAATGTCAGAACTTAACAAGGCATTGTCGGCAGCAAAAACTGACACC
species | Physcomitrella patens |
transcript | PP1S47_196V6.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATTTCAATGAGAG ATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTAACGCAEST: gi|162202250|gb|FC377586.1|FC377586
genomic: ATTTCAATGAGAGgtgagagttt ... tcgtattcagATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTAACGCA
EST: GACCGTTTAGGAGAGGATTTTGCAGAGCTCTTTAAAGATTTCAATGAGAG ATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTAACGCAEST: gi|208347797|gb|DC921124.1|DC921124
genomic: GACCGTTTAGGAGAGGATTTTGCAGAGCTCTTTAAAGATTTCAATGAGAGgtgagagttt ... tcgtattcagATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTAACGCA
EST: TTTCAATGAGAG ATTGACTGTAGTAGAGGAGCTNGCGAAGGCAGCCANCAAGAAATTAACGCAEST: gi|37833862|gb|BJ591874.1|BJ591874
genomic: TTTCAATGAGAGgtgagagttt ... tcgtattcagATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTAACGCA
EST: TTTTGCAGAGCTCTTTAAAGATTTCAATGAGAG ATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCCACCAAGAAATTAACGCEST: gi|162179887|gb|FC355958.1|FC355958
genomic: TTTTGCAGAGCTCTTTAAAGATTTCAATGAGAGgtgagagttt ... tcgtattcagATTGACTGTAGTAGAGGAGCTGGCGAAGGCAG-CCAACAAGAAATTAACGC
EST: GACCGTTTAGGAGAGGATTTTGCAGAGCTCTTTAAAGATTTCAATGAGAG ATTGACTGTAGTEST: gi|162177458|gb|FC353719.1|FC353719
genomic: GACCGTTTAGGAGAGGATTTTGCAGAGCTCTTTAAAGATTTCAATGAGAGgtgagagttt ... tcgtattcagATTGACTGTAGT
EST: GACCGTTTAGGAGAGGATTTTGCAGAGCTCTTTAAAGATTTCAATGAGAG ATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTATCGCA
genomic: GACCGTTTAGGAGAGGATTTTGCAGAGCTCTTTAAAGATTTCAATGAGAGgtgagagttt ... tcgtattcagATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTAACGCA
gtgactatctgccgcatatttgatatgcctcaaatcttgctgtggtcgtattcagATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTAACGCAGGGAATGTCAGAACTTAACAAGGCATTGTCGGCAGCAAAAACTGACACC
atttgat putative branch site (score: 5)
atatttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaatggctgggcaattcttttcctcagtaacctggtctatgcggtgactatctgccgcatatttgatatgcctcaaatcttgctgtggtcgtattcagATTGACTGTAGTAGAGGAGCTGGCGAAGGCAGCCAACAAGAAATTAACGCAGGGAATGTCAGAACTTAACAAGGCATTGTCGGCAGCAAAAACTGACACC
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